| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1187 |
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| Symbol | |
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| ID | 5108688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1336151 |
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| End bp | 1339321 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640502409 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001186684 |
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| Protein GI | 146306219 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1204] Superfamily II helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCACT GGCTGCTGGA AGCGATTGCA GAACGGCGTG CACAAGCGCT GCGTGATGCT
GACCGGGTGC AGTTCTACCG TGAAATGACG CCGCAAGAGC CTGATTTAGA TGCTCAGACC
ATTCATGAGG TAGTGGCTGC GCTGGAACTG GCCGTGCTGG ATATGGAACT GGACCGCTTT
GGGGATGAGA AGGATCGCCA GGCGGTACTG CACAGTGCAG CAGCAGATGC TTTCCGACTT
TTGCGGGTAC TGCCCTTACC TGAAACTCCG ATGGCAGCGG CTACGCACAT GCTGCGGGCA
TCCATACTGG CGGTGATTGG TGACCGGGGA GCAGATGCTG CGCGCTGGCT CCGTGCGCTT
GATGATAAAA AAGCTTGGCC CGTGCTACCC CTGAACTCGT CAGATTGGGG GGAGCGCTGT
CGTGCCACTC TTACCGATGT ATGGTTGCGC CTGGTTCGCA AGCAAGGCTG GAACGACCGT
GACACCGTAC TTGAGCGGGT GGCTGCTCTG CGCACCAGCC AGCAGGAGTT TGAGCGAGAG
TACCTGGGGT CTTTCGATCC GCTGCAAGCA AAGCGCTCGG CGCTAGAGCT TATCGCCATC
TACCATTTGG CCAAAGCAGC TGACGTGCTA GCCCACTTCA TCACCGATGG CGTGGTGGAG
GATAGTTTTC AGATTCAGCC GATGCTGGAC TCGCACTTTG ACCGTGCCAT TGCGGCCTGT
GATACCGCTC AGTTGCTTGA GCTGGGGCCG CTAACGCGTC TGTTGGCAAG GGCAGCCGCT
CAGATGGAGG CGAATTCGCT GTGGACGGTC ACTCGTGCGG TGAACTCAAG GGTGACGAAA
TTTGTGCGCG AGTTGGTCAG TCGTGGCCGT GGTGATCGTG CCCTGTTCGA TGTGCTGCCA
CCTCAGCGCC GCACGCTTGC TGAGCGGGGC TTGCTGGGAT CTAGCCGCCG TGCCGTGGTG
GTTAGTCTGC CGACTTCCAG TGGTAAGACG CTGATTGCCC AGTTTCGCAT GCTGCAGGCG
CTGAATCAGT TTGATGACCG CAAGGGGTGG GTTGCTTATC TTGCACCCAG TCGGGCACTG
GTGAATCAGG TTACGCGACA GCTACGGCGC GATTTCCAGC CGCTAGGCGT GGTAGTGGAG
CGGGTCAGTC CAGCTATGGA GGTCAACGGC ATCGAGGCGG GGGTGTTGGC CGAGCAACAG
AGTGATGCTC AGTTTCGTGT TCTTGTAGCC ACGCCCGAAA AGTTCGATTT GATGCTACGC
CAGGGGTGGG AGGAAAAAAT TGGTCGTCCG CTCACACTAG TTGTGGTGGA TGAAGCTCAC
ACGATTCAGG ACAGTGAGCG CGGACTGCGG CTTGAGTTGC TGCTAGCAAC TATTAACCGT
GAGTGCCGCG AGGCGCAGTT CCTACTGTTG ACGCCTTTCA TCCAGAACGC CCGGGAAGTT
GCGCGCTGGT TGGGTGGTCT GAACTCTGAA GACATAAGCC TTGGGGTGGA CTGGCAGCCG
AATGACAGGG CTATCGGTAT TGTCAGCGCG GTAGATGCGG GTGCCAAGAA GGGGCGAAGT
CGCGATTATC AGGTGAACTT CGAGACAGTT CACACTTCTC GACCCAGTAT TATCCTGGAT
GACGTGTTCC CTCTGGGCAG AGAACAGAGC CTGGCTACCT CGCTGACGGA GGTCAAGGCT
GTGGGTACGC TAGCTGCGAT CGCTGCGCGC AAGCTGGCTG CCCGTGGGCC GGTTATTGCC
ATGCACAACA CTCCGGATAA TGTCTGGAGA TTGGCACATA AGCTGAAGTC TGGACGAAGC
ATAGAACTGT CGGCTGATTT GCGGTTTGTG CAGGACTATG TGGCGGCAGA GATGGGCGAG
CAGTTCCCGT TGGTGGATTT GTTGTCCCAT CGTGTGGGGG TGCACCATGG CGGGCTGCCG
GAAGAAGTCC GGATGCTGAT GGAGTGGCTG TTCGAGAAAG GTCATCTGGA TGTCCTGGCA
GCCACTACTA CCCTTGCCCA GGGGGTGAAC TTTCCTGTGA GCGGTGTGGT GATGGCGTCT
ACTCATTACC CGCAAGGAAA GAGCTCTGTT CCCATGCCGC CGGAGGACTT CTGGAATATT
GCTGGTCGGG CGGGGCGTGT TTCTCAAGGG CAGTTGGGTG TGGTCGCGCT GGTGGCCAAA
GACGCAGCTG ACGTGGAAAA ACGTCGTGAC TTCATCAACC GCAACACCGG AGATCTGAAC
TCCGCACTGA TTCAGTTGGC TCAAGCTGCA GCCGGTGAAC TGACTGACCT TGGATTGATT
GTTTACCACC ATCCCGAGTG GTCTAGCTTT CTGCAGTATC TAGCCCATAC CTACCGCCAG
ATGGGGCAGC CGTCCAACTT TGCCGATCAG ATCGAGCAGG TCTTGCGTGG CACCTTCGGC
TTTGAACGGC TTCGCACGTC AAACAGTCAG CTTGCTCGCA GTTTGCTTAC AGGTATCCGC
AGTTACGTTT CTTACATGGC TAGCCCTGCA CAACCGCTAG GGCTGGTAGA CAGTACGGGC
TTCTCGCTGC AGAGCATCAA AACGGTCATG ACCCATCGCG GTAACATCGG GCCAGATTCA
TGGGATCGGG ACAGGCTGTT CAAGGCTGGT GACGGCACTC TGCAGACCAT GATGGGGGTG
CTGCTCCGTG TGCCGGAGTT GCGCGATAAC CTGAAGGCAG TTTTAGGTGG AAAAACGCCA
GATGGCGACA AACTTGCGCT CATTTTGAAG GACTGGGTGA ATGGTGAAGA GCTGGTCACC
ATTGCCGAGC GGCACTTCAG CCAGGAAGGC ACGGATACAG TTACTGCCTT GACCAAGTGC
GGTCAGAACC TCTTCGGTAA GCTGGCTCAT ACCTCTTCTT GGGGGTTGAA TGCACTGCTT
GCTATTACAG GATCAGAGCT TGAAGACGGC GAGCGTAGCC TATTAGCCAA TCTACCCTCG
CAGGTGTATT ACGGTGTATC GACAGATGAA GCAGTTTCGC TGCGCCTTCT AGGTGTACCT
CGCCGAGCCG CACCAGCTTT GGCTCGGGCG ATGCAATTGA AACCAGGTGA CTCCTTGCCT
TTGATCCGGC AACGCCTTGA GGCCTTGCCG GAACAGGGGT GGAGTGCTGC ACTGGGCGCT
GATGGACAGG TTTATCGCAA AGCTTGGCTG ATCATGGACG GAGTGGAGTA G
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| Protein sequence | MNHWLLEAIA ERRAQALRDA DRVQFYREMT PQEPDLDAQT IHEVVAALEL AVLDMELDRF
GDEKDRQAVL HSAAADAFRL LRVLPLPETP MAAATHMLRA SILAVIGDRG ADAARWLRAL
DDKKAWPVLP LNSSDWGERC RATLTDVWLR LVRKQGWNDR DTVLERVAAL RTSQQEFERE
YLGSFDPLQA KRSALELIAI YHLAKAADVL AHFITDGVVE DSFQIQPMLD SHFDRAIAAC
DTAQLLELGP LTRLLARAAA QMEANSLWTV TRAVNSRVTK FVRELVSRGR GDRALFDVLP
PQRRTLAERG LLGSSRRAVV VSLPTSSGKT LIAQFRMLQA LNQFDDRKGW VAYLAPSRAL
VNQVTRQLRR DFQPLGVVVE RVSPAMEVNG IEAGVLAEQQ SDAQFRVLVA TPEKFDLMLR
QGWEEKIGRP LTLVVVDEAH TIQDSERGLR LELLLATINR ECREAQFLLL TPFIQNAREV
ARWLGGLNSE DISLGVDWQP NDRAIGIVSA VDAGAKKGRS RDYQVNFETV HTSRPSIILD
DVFPLGREQS LATSLTEVKA VGTLAAIAAR KLAARGPVIA MHNTPDNVWR LAHKLKSGRS
IELSADLRFV QDYVAAEMGE QFPLVDLLSH RVGVHHGGLP EEVRMLMEWL FEKGHLDVLA
ATTTLAQGVN FPVSGVVMAS THYPQGKSSV PMPPEDFWNI AGRAGRVSQG QLGVVALVAK
DAADVEKRRD FINRNTGDLN SALIQLAQAA AGELTDLGLI VYHHPEWSSF LQYLAHTYRQ
MGQPSNFADQ IEQVLRGTFG FERLRTSNSQ LARSLLTGIR SYVSYMASPA QPLGLVDSTG
FSLQSIKTVM THRGNIGPDS WDRDRLFKAG DGTLQTMMGV LLRVPELRDN LKAVLGGKTP
DGDKLALILK DWVNGEELVT IAERHFSQEG TDTVTALTKC GQNLFGKLAH TSSWGLNALL
AITGSELEDG ERSLLANLPS QVYYGVSTDE AVSLRLLGVP RRAAPALARA MQLKPGDSLP
LIRQRLEALP EQGWSAALGA DGQVYRKAWL IMDGVE
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