| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1184 |
|---|
| Symbol | |
|---|
| ID | 5108685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1333427 |
|---|
| End bp | 1334395 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640502406 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001186681 |
|---|
| Protein GI | 146306216 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03299] phage/plasmid-related protein TIGR03299 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.818215 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCATC AAGTCGAACA AATGGCTTAC GTCGGCACCA CTCCCTGGCA CGGCCTGGGC
AACAACCTGC CTCGCAAGCA ACCTATCGAG GTCTGGCAAC GTCAAGCTGG TATGGACTGG
CAAATCCAGG AGTCGCCGGT ACATTTCAAA TCGGATGCTG TCGGTCATCT GGGCACGATC
CATTCCTTTC CTGAACAGAA GGTGCTCTAC CGCTCCGATA CCAAGGCTCC GTTATCGGTA
GTCTCCAACC GCTATCACAC CGTGCAACCG CGCGAGGTGC TGGAGTTCTA TCGCGATCTG
ACCGAAGTGT CCGGCTATGA GCTGGAAACT GCGGGCGTGC TCAAGGGAGG TCGCAAGTTC
TGGGCGCTGG CGCGTACCGG ACAAGGCACG TCGATCAAGG GCAACGATCA GGTCAACGGC
TACCTGCTGC TGGCGACTTC CTGTGACGGC ACCCTGGCCA CCACGGCGAC ACCGACCACC
GTTCGCGTGG TGTGCAACAA CACCCTGACG GTCGCCCTGG ATGGCACCAG CCGTGCGATC
AAGGTGCCGC ACAACACCCG CTTCGATCCG AAGGCGGTGA AGAAGCAACT TGGCATCGCC
GTCTCGCAAT GGGACGACTT CATGTACCGC ATGCGCGCGC TGGCTGAGCG CAAGGTGCAG
TGGCATGAGG CACTGGGCTA CTTCATGAAC GTGCTGTGCG AGGTCAGTCC GACCGGCCAA
CTGCCCGAGC AGTTGCCCAA CGAACGCGCT TTGCGCCGCG TGCAGGAGCT CTACGAAGGA
CGCGGGCGTG GTTCGGATCT GGAGTCGGCT CGCGGCACTG CCTGGGGTCT GCTCAACGCG
GTGACCGAGT ACGTTGACCA TGAGCGTCGC GCTCGCAGCA CTGAGTACCG ACTCGACTCG
GCCTGGTTTG GCCAAGGTGC ACAGGTCAAG CAACGCGCTC TGAATGCGGC CCTGCAAATG
GTCGCCTGA
|
|---|
| Protein sequence | MAHQVEQMAY VGTTPWHGLG NNLPRKQPIE VWQRQAGMDW QIQESPVHFK SDAVGHLGTI
HSFPEQKVLY RSDTKAPLSV VSNRYHTVQP REVLEFYRDL TEVSGYELET AGVLKGGRKF
WALARTGQGT SIKGNDQVNG YLLLATSCDG TLATTATPTT VRVVCNNTLT VALDGTSRAI
KVPHNTRFDP KAVKKQLGIA VSQWDDFMYR MRALAERKVQ WHEALGYFMN VLCEVSPTGQ
LPEQLPNERA LRRVQELYEG RGRGSDLESA RGTAWGLLNA VTEYVDHERR ARSTEYRLDS
AWFGQGAQVK QRALNAALQM VA
|
|---|
| |