| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1154 |
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| Symbol | |
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| ID | 5108127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1300004 |
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| End bp | 1301239 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502378 |
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| Product | porin, LamB type |
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| Protein accession | YP_001186653 |
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| Protein GI | 146306188 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4580] Maltoporin (phage lambda and maltose receptor) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.193768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.463073 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCA CACAGCAAAA CCTCCCTTGC GCGCTTGGCG CCCCCTGCCT ACTTGCATTG
GTCCTGGCCG CACCCCAGGT GCAGGCTCTG GAATTCACCG GCTATATGCG CAGTGGCGCC
GGCGGGTCGG AGAACGGCGG CACCCAGTCC TGCTTCCAAC TGCCCGGCGC GCAGTCCAAG
TACCGCCTCG GCAACGAGTG CGAGCAGTAC ATCGAACTGG ACCTGCGCCA GGATCTGCTG
ACCCTCGACG ACGGCTCGGT GCTGAGCGTC GAGGGCATGG CCCAGCTCTA CAACCAGTAC
GGCCACACAC CGAAGTTCAC CGGCGACTAT GGTTTCGCGC GGATGAACCA GATGTACGCC
GAGTGGAGCA AGGTGCCCGC GCTCAATGGC GGTTCGCTGT GGGCCGGCCG CCGTTTCTAC
AAGCGTAACG ACATCCATAT CACCGACTTC TACTACTGGA ACCAGAGCGC CACCGGCGCG
GGTATCGAGG ATTTCGAGTA CGGCGGCCTG AAGTACAGCT ACGCCTTCTC GCGCAAGGAC
AGCTACTTCC AGGAGCCCTA CATCAACCGC CACGACTTCA ACGTCGCCGG CTTCAAGGTC
AACCCGGGCG GCGAGCTGGA GTTCGGCGTC AGCTACATCG ACAAGCCCGA CAGCACCGGC
GCCAACAGCG GCTGGGCGAT CACCGCGCAG CACAAGCAGA GCGATTTCTT CGGCGGCGTC
AACACCTTCG CCCTGCAGTA CGGCCGCGGC CCCGGCACCG GTCTGGGCTA TACCGGCGAC
GTCACCCTCG ATCGCGACAA CAAGAGCTGG CGCCTGGTGG AGTACTTCGA CTGGCAGGCT
ACGCCGCGCC TCGGCGGCCA GGTGCAGTTC GTCTACCAGA AGGACACCCG GCCCGACGGC
GACGATCAGG ACTGGCTGTC GGTGGGCGGG CGTACCAGCT ACGCCTTCAC CGAGCAGTTC
AAGCTGGTCG GCGAGCTGGG CCACGATCAG GTCGATGCCA CCGACGGCAC GCGCAAGCTG
ACCAAATTCA CCATCGCCCC CACCTGGTCG CCGGCCGGCC CCGGCTTCTG GGCGCGTCCG
GAGTTTCGCC TGTACTACAC CTACGCCAGC TGGAACCGCG CGGCGCAGCA GGCGGCCAGC
CAGTTGGCGG CCGGCTCGGC GCTGTCCGAC AGCGGCGCCT TCGACAATGC CCGTCACGGC
TACAACTTCG GCGTGCAGGT GGAACACTGG TGGTAA
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| Protein sequence | MKTTQQNLPC ALGAPCLLAL VLAAPQVQAL EFTGYMRSGA GGSENGGTQS CFQLPGAQSK
YRLGNECEQY IELDLRQDLL TLDDGSVLSV EGMAQLYNQY GHTPKFTGDY GFARMNQMYA
EWSKVPALNG GSLWAGRRFY KRNDIHITDF YYWNQSATGA GIEDFEYGGL KYSYAFSRKD
SYFQEPYINR HDFNVAGFKV NPGGELEFGV SYIDKPDSTG ANSGWAITAQ HKQSDFFGGV
NTFALQYGRG PGTGLGYTGD VTLDRDNKSW RLVEYFDWQA TPRLGGQVQF VYQKDTRPDG
DDQDWLSVGG RTSYAFTEQF KLVGELGHDQ VDATDGTRKL TKFTIAPTWS PAGPGFWARP
EFRLYYTYAS WNRAAQQAAS QLAAGSALSD SGAFDNARHG YNFGVQVEHW W
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