| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1117 |
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| Symbol | |
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| ID | 5108090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1256280 |
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| End bp | 1257278 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502341 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001186616 |
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| Protein GI | 146306151 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.481935 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATTC TGGTCACCGG CGCGAGCGGT TTCATCGGTG GGCGTTTCGC CCGTTTCGCC
CTCGAGCAAG GCCTGGCGGT GCGGGTCAAC GGCCGGCGTG CCGAGGGTGT GCAGCACCTG
ATCAAACGCG GCGCCGAGTT CGTTCAGGGC GATCTGGCCG ATCCCGAACT GGTCCAGGCC
CTGTGCCAGG ATGTCGAGAC GGTGGTGCAC TGCGCTGGCG CGGTGGGTGT CTGGGGCGAC
TACGCGCATT TTCATCAGGG CAACGTGACG GTGACCGAGA ACGTCATCGA CGCCTGTCTG
AAGCAGAAGG TGCGGCGCCT GGTGCACCTG TCGTCACCGT CGATCTACTT CGACGGCCGT
TCCCACGTCG ATATCCGCGA AGGGCAGGTG CCCAAACGCT TCTCCAATCA TTACGGCAAG
ACCAAGTACC TGGCCGAGCA GCAGGTGTTC GCCGCGCAGG AGTTCGGCCT GGAGGTCATC
GCCCTGCGCC CGCGCTTCGT CACCGGCGCC GGCGATACCA GCATCTTCCC GCGGCTGATC
GCCATGCAGC GCAAGGGGCG CCTGGCGATC ATCGGCAACG GCCTGAACAA GGTCGACTTC
ACCAGCGTGC ACAACCTCAA CGATGCCCTG TTCAGCGCGC TGCTGGCCGC CGGCCCGGCG
CTGGGGCAGG TGTACAACAT CAGCAACGGC GCTCCGGTGC CACTGTGGGA TGTGGTCAAC
TACGTGCTGC GGCGGCTGCA GTTGCCGCCG GTGACTCGCC ATGTGCCGTA TCCGCTGGCC
TACGCGGCGG CCTGTGTCAA CGAAGGCGTG TGCCGGCTGC TGCCCGGGCG CCCGGAACCG
AGCCTGCTGC GCCTGAGCGT GGCGGTGATG GCCAAGGATT TCTCGCTGAA CATCGACCGC
GCCCGCGAAT TTCTCGACTA CGAGCCCAGG GCCAGCCTGT GGGACGCACT GGATGAGTTC
TGCACCTGGT GGCAGGCGCA GATGGGGGCT CAGGCGTAG
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| Protein sequence | MKILVTGASG FIGGRFARFA LEQGLAVRVN GRRAEGVQHL IKRGAEFVQG DLADPELVQA
LCQDVETVVH CAGAVGVWGD YAHFHQGNVT VTENVIDACL KQKVRRLVHL SSPSIYFDGR
SHVDIREGQV PKRFSNHYGK TKYLAEQQVF AAQEFGLEVI ALRPRFVTGA GDTSIFPRLI
AMQRKGRLAI IGNGLNKVDF TSVHNLNDAL FSALLAAGPA LGQVYNISNG APVPLWDVVN
YVLRRLQLPP VTRHVPYPLA YAAACVNEGV CRLLPGRPEP SLLRLSVAVM AKDFSLNIDR
AREFLDYEPR ASLWDALDEF CTWWQAQMGA QA
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