| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0960 |
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| Symbol | |
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| ID | 5108818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1085857 |
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| End bp | 1086705 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640502177 |
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| Product | Tfp pilus assembly protein PilW-like protein |
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| Protein accession | YP_001186460 |
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| Protein GI | 146305995 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.775575 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGCA GTCAAAATCA ACGCGGGCTG TCGATGATCG AGCTGCTGAT CAGCCTCGCA
ATCAGCAGCT TTCTGATTAT CGGCATCACC CAAGTCTATA TCGACAACAA GCGCAATCAG
GTTTTCCAAC TGAACCAGAT GGGCAATCTT GAGGGCAGCC GCTTTGCCGC CCTGGTAATC
GACCAGTACT TGGGCAAGGC AGGTTATCGA CGCAACCCTG CTGCGCTGGT CGAAACGGCA
TTCCCTAGCA GGGCGGCTGG AGGTGATTGC CTGGAGTTCA AGCCGGGGCA CACTGCTACG
GGTCTCAACC CCACGGTCGG CGTGGGGTTC TGCATCCGCT ATCAACCTCA GGTGAGCGGT
GAGCTGGACT GTCAGGGAAG CAGTAGCGGC GTCAACTATA CCGAAGCGTT TCCCAACAGC
CTCTCCAGTT CCGATCAGAT CATTCTTGCC TTCAAGTACG AGTCCGGCGG CAATACCGAT
TTGGAAAAGG GGCGACTGCT TTGCAAGAAC CTCAACGCCA CCGCCCCTCA GTACAGTGAG
CTGCTGAGCG GTATTGCCGA TATCCGCCTG GAGTTCGGTG TAGGCAACAG CGATGCACTG
GATAAGGAAG TGAGCACTTT TATCCCTCAC AAAGACTGGA CCGCGAACTC CGGCGCCATT
CGCAGCATTC GTTACAACCT GCTGTTGAGC AGTGGCGCGA AACTGCGCGA CAGCGAGGAT
TCGCTGATAC TGGACAAGTG GCTGACTGGC GCCCCCGAAG CCAGTAAGAC GCGCCTGCAG
AACGCTGACA ATCGCCGCAT CTACCAGATC GCCAGCAGCA CGCAAACCCT CAGGAACCTC
ATGCCATGA
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| Protein sequence | MKSSQNQRGL SMIELLISLA ISSFLIIGIT QVYIDNKRNQ VFQLNQMGNL EGSRFAALVI
DQYLGKAGYR RNPAALVETA FPSRAAGGDC LEFKPGHTAT GLNPTVGVGF CIRYQPQVSG
ELDCQGSSSG VNYTEAFPNS LSSSDQIILA FKYESGGNTD LEKGRLLCKN LNATAPQYSE
LLSGIADIRL EFGVGNSDAL DKEVSTFIPH KDWTANSGAI RSIRYNLLLS SGAKLRDSED
SLILDKWLTG APEASKTRLQ NADNRRIYQI ASSTQTLRNL MP
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