| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0958 |
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| Symbol | |
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| ID | 5108816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1081518 |
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| End bp | 1085201 |
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| Gene Length | 3684 bp |
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| Protein Length | 1227 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640502175 |
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| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
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| Protein accession | YP_001186458 |
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| Protein GI | 146305993 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.327934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCA TTCGTGACAT TCGCGCCAGG ACACTGGCCA GCACCCTGTC CGGCATCGTC
CTGCTCAGTG CGGCAAACAG CTATGCTGAT GTATCCCAAA CCCCGCTGAG CCTAACCGTT
GGCGTGCCGC CAAACATGCT GCTGACTCTG GATGATTCAG GCAGTATGCG CTGGGCTTTT
GCCCCCGACA TCGTCAACGG CACCCATGCG ACACGCCGAG CCAAATCGAG CGATTTCAAC
CCGCTGTATT TCAACCCTAA TATCACCTAT CGCGCCCCTA CAGTGTTCAC CACTGCAGGG
CTTGAGCAGC AGCTATCTAC CAGTTATACG AATGCTCTGC TGAATGGCTT TAAAAGTACA
TACGGCGGCA TTGATCTGAG AAGCAACTAT AGGTTTACCT GGAGTTACGA CCTGCGCAGC
ACACAGGCAA CCGCCTATGG CTACAGCAAT ACGGACAACC GTTTGGGCGA AAACCCCAGC
GCAGATTTCA GCGCAAGCGT TTCTCGCAGC ACTAACGGCA CTAGCACGGT AACGAATGGC
AACATCAGCT TCGCCATCAC CCGTAGCGGC TCCACCAGTT GCTCTGCCAC TGCCACTATT
TCAGGGGTTA CAGTCACTGC AACCTGTACC GCTCCATCAA GCAACAACTA TACGGCTACC
CTGGCTCAAC GCGGCGTACC CGCCTATTAC TATACGTACG ACGCCTCACT AGCTAGCAAC
TGCACCACCG CCAATGACAG CTGCTATCGC CTGAACTTTG TCAGCGCCGC TCAGCAACAG
AACTTCGCCA ATTGGTACTC TTTCTACCGT AACCGCGCGT TAGCAACGAC TTCCGCTGCG
GCGCTGGCCT TCTATGACTT GTCTTCCTCG GTACGTCTAA GTTGGCAGGG GCTGGGTAAC
TGCACCACCT TCAGCAGTAC AGATGCCAAT AGCCAGTGCA AGATCAACGC ATTCAAGGAA
TACTCGCCGA CTCACAAAGG CCAGCTCTAT GCCTGGCTAC AGGATATCAA CTTCAACCAA
GGCACTCCGT TACCAGCGGC GCTAAAGCGC GCTGGTGAGT TCTTTACCAC CGCCACTCCC
TGGCAGAAAA ACCCCAACGG CAGTGGTAAC ACTACGCAGA ACACCTATGC CTGCCGCGCC
AGCTACCATA TTCTGATGAC CGACGGCATG TGGACCTCAA CCACCAGCGC GCCCAGTAAC
TTTCGTCACG ATGCGGCCAC CTTCACGCTG CCGGACGGAC GCAATTACAG TGAACGTCGC
CCTTATTACG ATACGACTGC CGATACCCTG GCTGACTTGG CCATGCACTA CTGGGCCACG
GATCTCAATC CCAACCTAGC CAATCGCGTC CCCGCCTATA CCCCCTTCAA AAGCGGTGAT
ACCACCACCG ACTACTGGGA CCCGCGCAAC GATCCGGCCA CTTGGCAGCA TATGACCAAC
TTCGTCATGG GCCTGGGCCT GACGCAGTCG CTCAACAACG CCAACGTGCC ATGGGCTGGC
AGCACCTTTT CCGGTGCAGG CTATAGCAAT CTGGTAGCCG GCACGGCCAA CTGGCCGCCA
GTGGCCGCCA GTGGCGCTAA CAATGCCAAC AACGTCTACG ATCTTTGGCA TGCGGCGATC
AACTCTCGCG GCGAGTTCTT CAGTGTGGAT AGCCCCGAGG CCATGGTGCA GGCCTTCGAT
GACATCCTCA AGCGTATCGC CGACCGCAAG TCGACTGCGG CCCGCCCCGC AATCAACTCT
GGCCAGGTCA GTGCAGACGA GAACGATGAG GGCAAGGTCA TCACCGTTTC GTACCAGACC
TCATACGCCA GTGACGACAA CTGGTCGGGT GATGTGAAAC GTTTCGAGAA ATCTTGGAAC
GCACAAAGCA ATGCTTTCGA AACATCTCAG GTCTGGAGCG CAGAGTCCCA GGTACCGGGG
TGGGCCAACC GCAATATCAA GATCGCGGGC GACAGCAACA ACGGTTTGGT AAATTTCAGC
TGGGCTAACG CGGGCTCCGC CAATACGGTA GGCACCCTTG CCTACTGGCT TAATCGCGAT
CCGGAGAACA GTAACGTCGT CGATAACCGG GCACAGCAAC GACTGGAATA TTTACGTGGC
AACCGCAGCG GCGAGGGCAG TACCTTCCGC CAGCGTAGCA GCGTGCTGGG CGACTTCTAT
TCCTCTACAC CTGCTGTGGT GAGTGGAGCG CGGTATCTGG TCAACGTGAC CAATGCCCTA
GAAAACACCA ATACGTACAG CGCCTTCGCC AGCACTGTAG CCAGCCGTAC CCCCCGAGTT
TATGTCGGCG GCAACGATGG CATGCTACAC GCATTCAATG CCAAGACCGG GGTGGAGGAG
TTCGCCTTTA TTCCCAGCGC AGTGTTCAAC AAACTGAACA AACTCACCGG TAGCAACTAC
AGCCATGAGT TCTATGTAGA AGGCACCCCT GTAGTGGGCG ATATCTTTAC CGGCACCGAA
TGGCGCACCA TTTTGATCGG CACGCTCAAG GCGGGTGGAA AGTCTATTTT TGCCCTCGAC
ATCACGACCC CTGGCGAAGA GAAACTGCTG TGGGAGTTTG ATGACAGCCG GCTCAGCGCA
TCGACGGTGA AGATGGGCTA CACCTTCGCG CAACCGACCA TCGCGCGCCT CCATTCCGGG
AAGTGGGCGG TGGTTATCGG CAACGGATAT GAAAGCGAGG GTAATACCAG CGGTAAAGCG
GCGCTCTTTA TTATCGATGC CTTGGAGGGC AACCTGCTCA AGAGCCTGGA GGTCCAAGGC
ACCGAAGGCG TTGCCAACGG TCTATCTACC GCCAAGCTTG GTGACTTCAA TGCCGACGGT
GTGGCCGATT ATGCCTATGC AGGTGACCTG CAAGGAAATG TCTGGCGTTT CGATCTTTTG
CGTAACGGCC GCAGCGAAAG CGCGCCCTTT ACTCGTGAGG ATGACGGCCA AACGGCGATC
TCCGACTTCA AAGTTGCCTA TGGTGGAGCT CCGCTGTTCC GCGCCACTTT CAACAATACT
CCCCAACCCA TTACCTCAGC ACCAAGCATA GTCTTGCACC CGACCGGCAC GGGCTATCTG
GTGGTCTTCG GCACTGGCAA GTTCTTCGAA ACCGGTGACA AGGAAGGCGA CAAGAGTATC
GCGCAGTCAG TCTATGGCAT CTGGGACAAA CAGACCAAAG GCCAGCCATC CAGCAATCCA
GGAATCACCC GCAGCAGCTT GCAACAGCAG AGCATAAGCG AACAGACTAC CGTAAGCGCC
GAGGATGGCA CTACACGTCA AGGCCGCATT ATCAGTAACA ACTCCATCGA CTGGAGTACG
CAGAACGGTT GGTATCTCAA TCTTGTGCAA AGTGATGGCG AGATGGTTGT AGAGAACATG
TCGCAGCTGG GGCGCACTAT CTTCATGCAG TCTCTGGTAC CCAATGACGA TCCTTGTGGC
GATGGTGCGG CAAACTGGAC CTATGCGCTC AACCCTTTCA CTGGTGGGCG TACCGTTCAG
AACTCTTTCG ATTACACACC TACGGGTGAA GCGCAAAGCA CCAACATATC GGCCATTCGC
CAGGATGGAG AAGGTGGCGG TACCATCTCG CAGAACTCCG ACAGCGGGTT CCAATACTGC
ACTGGCCAGA CCTGCGTGAA TATCTACCCA GATCCATCCA GCATCGGTCG TCAGACCTGG
CGGCGCGTGG AGACTGAGGA CTAA
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| Protein sequence | MNAIRDIRAR TLASTLSGIV LLSAANSYAD VSQTPLSLTV GVPPNMLLTL DDSGSMRWAF
APDIVNGTHA TRRAKSSDFN PLYFNPNITY RAPTVFTTAG LEQQLSTSYT NALLNGFKST
YGGIDLRSNY RFTWSYDLRS TQATAYGYSN TDNRLGENPS ADFSASVSRS TNGTSTVTNG
NISFAITRSG STSCSATATI SGVTVTATCT APSSNNYTAT LAQRGVPAYY YTYDASLASN
CTTANDSCYR LNFVSAAQQQ NFANWYSFYR NRALATTSAA ALAFYDLSSS VRLSWQGLGN
CTTFSSTDAN SQCKINAFKE YSPTHKGQLY AWLQDINFNQ GTPLPAALKR AGEFFTTATP
WQKNPNGSGN TTQNTYACRA SYHILMTDGM WTSTTSAPSN FRHDAATFTL PDGRNYSERR
PYYDTTADTL ADLAMHYWAT DLNPNLANRV PAYTPFKSGD TTTDYWDPRN DPATWQHMTN
FVMGLGLTQS LNNANVPWAG STFSGAGYSN LVAGTANWPP VAASGANNAN NVYDLWHAAI
NSRGEFFSVD SPEAMVQAFD DILKRIADRK STAARPAINS GQVSADENDE GKVITVSYQT
SYASDDNWSG DVKRFEKSWN AQSNAFETSQ VWSAESQVPG WANRNIKIAG DSNNGLVNFS
WANAGSANTV GTLAYWLNRD PENSNVVDNR AQQRLEYLRG NRSGEGSTFR QRSSVLGDFY
SSTPAVVSGA RYLVNVTNAL ENTNTYSAFA STVASRTPRV YVGGNDGMLH AFNAKTGVEE
FAFIPSAVFN KLNKLTGSNY SHEFYVEGTP VVGDIFTGTE WRTILIGTLK AGGKSIFALD
ITTPGEEKLL WEFDDSRLSA STVKMGYTFA QPTIARLHSG KWAVVIGNGY ESEGNTSGKA
ALFIIDALEG NLLKSLEVQG TEGVANGLST AKLGDFNADG VADYAYAGDL QGNVWRFDLL
RNGRSESAPF TREDDGQTAI SDFKVAYGGA PLFRATFNNT PQPITSAPSI VLHPTGTGYL
VVFGTGKFFE TGDKEGDKSI AQSVYGIWDK QTKGQPSSNP GITRSSLQQQ SISEQTTVSA
EDGTTRQGRI ISNNSIDWST QNGWYLNLVQ SDGEMVVENM SQLGRTIFMQ SLVPNDDPCG
DGAANWTYAL NPFTGGRTVQ NSFDYTPTGE AQSTNISAIR QDGEGGGTIS QNSDSGFQYC
TGQTCVNIYP DPSSIGRQTW RRVETED
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