| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0879 |
|---|
| Symbol | |
|---|
| ID | 5108973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 998392 |
|---|
| End bp | 999021 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640502095 |
|---|
| Product | toluene tolerance family protein |
|---|
| Protein accession | YP_001186379 |
|---|
| Protein GI | 146305914 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2854] ABC-type transport system involved in resistance to organic solvents, auxiliary component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.27843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGA CCTTGCGTAA TTCCCTGTTC GCGCTGCTGG CCGCCATGCC GCTGCTGGCC
CTGGCAGCGC CGAGCGCCCA TGAGGTGGTG CAGCAGACCA CCGACACCCT GCTGGCCGAT
CTCAAGGCCA ACAAGGAACA GTACCGCAGC AATCCCGCTG CCTTCTACGA TTCGCTCAAC
CAGATTCTCG GCCCGGTGGT GGATGTCGAC GGCATCTCCC GTGGGGTGAT GACCGTGCGC
TATTCGCGCC AGGCCTCGCC GGAGCAGATG AGCCGCTTTC AGGAGAACTT CAAGCGCAGC
CTGATGCAGT TCTACGGCAA CGCCCTGCTC GAGTACGACA ACCAGGACAT CCGCGTGCTG
CCGGCCGGCA AGCAGGATGC CGAACGCACC TCGGTGGGCA TGGAGATCCG TGATGCCAAG
GGCGCGGTCT ATCCGCTGTC CTACACCATG GTGGCGATGG ACGGGACCTG GAAGCTGCGC
AACGTGATCA TCAACGGCAT CAACGTCGGC AAGCTGTTCC GTGATCAGTT CGCCCAGTCG
ATGCAGAACA ACCGCAATGA CCTGGACAAG GTCATCGACA CCTGGGCCGA CACCGTCGCC
AGGGCGCGTC AGGCGCGGGG CGAGTCGTGA
|
|---|
| Protein sequence | MLKTLRNSLF ALLAAMPLLA LAAPSAHEVV QQTTDTLLAD LKANKEQYRS NPAAFYDSLN
QILGPVVDVD GISRGVMTVR YSRQASPEQM SRFQENFKRS LMQFYGNALL EYDNQDIRVL
PAGKQDAERT SVGMEIRDAK GAVYPLSYTM VAMDGTWKLR NVIINGINVG KLFRDQFAQS
MQNNRNDLDK VIDTWADTVA RARQARGES
|
|---|
| |