Gene Pmen_0842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0842 
Symbol 
ID5108936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp960993 
End bp961559 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content64% 
IMG OID640502058 
Productcupin 2 domain-containing protein 
Protein accessionYP_001186342 
Protein GI146305877 
COG category[S] Function unknown 
COG ID[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCAG ATCGCATTGG CGAACGTTTG CGCCGCTACC GGCGGGCCGC CGGCAAGACT 
CTCAATCAGG TGGCGGCCGA GGCCGGCCTG ACCGCCAGCT TTCTGTCCCA GGCAGAGCGC
AACCTGACCG GCGTCTCGCT ATCCTCGCTG GCCAGCATCG CCAAGGCGCT CGACGTGCCG
CTCAACGTGT TGTTCGACCA GCCCGCCCAA CCGCAGCCGG ATTCGCACGT GAACGAGCGG
GTGCGCTACA CCGTCGGCGG CCAGCTGCTG GCCTACGAAC GCCTGTCCAG CTCGTTTCCC
GGTAACTCGA TCAATGCGGT GAAGATGAAC ATTCCGGTGG GCTATCAGTC GGAGCTGATT
GCCCATGAAG GCGTGGAGTT TTCCTACGTG CTCAGCGGGC GGATCGTCTA CACCATCGAA
GGTCGCGACT ACCCGCTCGG CCCCGGAGAC TCGGTGCATT TCGATGCCGG CAAGCTGCAT
CGCCTGGCCA ACAGCGCCGA CACCCCGGCC GAAGTGCTGA CCATGACCAC CATGGCGCTT
TTCGACGATC ACCCCGTCAA CGAGTGA
 
Protein sequence
MTADRIGERL RRYRRAAGKT LNQVAAEAGL TASFLSQAER NLTGVSLSSL ASIAKALDVP 
LNVLFDQPAQ PQPDSHVNER VRYTVGGQLL AYERLSSSFP GNSINAVKMN IPVGYQSELI
AHEGVEFSYV LSGRIVYTIE GRDYPLGPGD SVHFDAGKLH RLANSADTPA EVLTMTTMAL
FDDHPVNE