| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0837 |
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| Symbol | dppF |
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| ID | 5108931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 955001 |
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| End bp | 955972 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502053 |
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| Product | dipeptide transporter ATP-binding subunit |
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| Protein accession | YP_001186337 |
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| Protein GI | 146305872 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACACCG TACTGCAAGC CCACGAGCTG ACCCGTCACT ACAGCGTCTC GCAGGGTCTG
TTCAAGCCAT CGGCAACGGT GCAGGCGCTC AATGGCGTGT CCTTCAGCCT CGAAGCCGGC
AAGACCCTGG CGGTGGTCGG CGAGTCCGGC TGCGGCAAGT CCACCCTGGC CCGCGCCCTG
ACCCTGATCG AAGAGCCCAG CGCAGGCAGC CTACAGATCG CCGGGCACGA AGTGGCCGGC
GCCAGCAGAG CCGAGCGCAA GCAATTGCGC CGCGACGTGC AGATGGTGTT CCAGAACCCC
TATGCCTCGC TCAACCCGCG GCAGAAGGTC GGCGATCAAC TGGCCGAACC GCTGCTGATC
AACACCGACC TCTCCCGCGC CGAACGCCGC GAGCGGGTGC AGGCGATGAT GCAGCAGGTA
GGCCTGCGTC CCGAGCACTA CCAACGCTAC CCGCACATGT TCTCCGGTGG CCAGCGCCAG
CGCATCGCCC TGGCCCGCGC CATGATGCTG CAACCCAAGG TATTGGTGGC CGACGAGCCG
ACCTCGGCGC TGGACGTGTC GATCCAGGCG CAGGTGCTCA ACCTGTTCAT GGACCTGCAG
GAGCAGTATG AGACCGGCTA CGTGTTCATC TCGCACAACC TGGCGGTGGT GCGCCACGTC
GCCGACGAGG TGCTGGTGAT GTACCTCGGC CGCCCGGTGG AGATGGGCGC GGCCGAGGCG
CTCTATGCCC GCCCGCTGCA TCCCTACACC CGCGCCCTGC TGTCGGCGAC GCCGGCCATT
CATCCCGATC CGGACAAGCC ACGGATGAAG ATCAGCGGCG AGTTGCCCAA TCCGCTGAAC
CCGCCCTCCG GCTGCGCCTT CCACAAGCGC TGCCCGCATG CCGATGAACG CTGCCGCGGC
GAACGCCCGG AGCTCAGGTT GATCGATGCG CGGCAGGTGG CCTGCCATCA TGTGGAGCGG
ATCGTCGACT AG
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| Protein sequence | MHTVLQAHEL TRHYSVSQGL FKPSATVQAL NGVSFSLEAG KTLAVVGESG CGKSTLARAL
TLIEEPSAGS LQIAGHEVAG ASRAERKQLR RDVQMVFQNP YASLNPRQKV GDQLAEPLLI
NTDLSRAERR ERVQAMMQQV GLRPEHYQRY PHMFSGGQRQ RIALARAMML QPKVLVADEP
TSALDVSIQA QVLNLFMDLQ EQYETGYVFI SHNLAVVRHV ADEVLVMYLG RPVEMGAAEA
LYARPLHPYT RALLSATPAI HPDPDKPRMK ISGELPNPLN PPSGCAFHKR CPHADERCRG
ERPELRLIDA RQVACHHVER IVD
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