| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0718 |
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| Symbol | |
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| ID | 5109048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 798517 |
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| End bp | 799845 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640501931 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001186218 |
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| Protein GI | 146305753 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGACCT CGATGTTCAA GCTCTCGACA TTGGGAGTCT GCTTGCTGGT CAACGCCAAT
ATAGCCATGG CAGCGAACGC CTCAGTGGAT CTATGGGCTC TTTACCTGGA AAGCCGCGAC
ACAGATCCTA GAATACTTAG AGCCGCAGCA CTGGAGAGAA GCAGCGCAGG GCGCCAACGT
GAAGCCTTCG GCCGATTACT GCCGCAACTC AATGCCAATG CCAACTTCAA TCGCAGCCAA
CGCGACGATA ACCTCACCCG CAGCCAGTAC GATGGGCAAG GTTATGCGCT CGGGCTAAGC
CAACTGCTCT ATGCCCCGCA GGCATGGCGA AGCTATCAGA AGTTTTCGGC GCTCACCAGG
CAGAGTGTTT TCGAACATGA AAACGCCCGC ATACAGGCGA GTATCGACTT GGTCGAGCGT
TATTTCGCAA CACTGGCGGC CGAGGATGAG TTGCGTCTAG TTCAGGCTGA GCTTGCCGCA
ACGGAGCGCA ACCATGTACG GCTCGAAGCC TTGTTCGCCA AGAAGATGGC CAAGGTCACC
GATGTACTGG AACTGAAAGC TCGCGTGGAC CTGTTGAACG CACGGTCCAT CGAAGCAGCC
AACCAGATCG AAATCAATAA GGAGACCATT GCCGAACTGA TCGGCCGGCC GATAGAACAA
CCGTTGAAAC GACTCGCAAC GCATCCTGAC TTCCTTGCGC CACAGAACGA TCAAGTTTTC
TGGGTAACCA CCGCACTGCG CAGCAATCCG GCGCTTCAGG CCAGCGAGCA GGCGCTGGAT
GCGGCACAAG CCGCCGTGGC TGAAGCGAAA GCAGGACACC TACCGACCCT GGCCTTCGAT
ATCAACGCGC AGCGCAGCGA TATCGGCTAC GAAGGCGCCT TGACGCCACG CTCAGATACC
TACGTCGCCT CATTTGGCCT GCAGATACCG CTGTATAGTG GCGGCTCGAC CCAGGCCAGG
GTGAGCTCAC TCTATGCGGA GCTCGATGCC GCGCAGCAAG AGCATGAAGC CCTGCGCCGA
CAGATCATGC GTGAGACGCG CACGGCATAT TTCAATATCG AAGCGAGCCT GAGCCGAATT
GCAGCATTGG AGCTCGCCTT GGCATCAGCC GAAAAGTCGC GCTCTGCGAC CGAGCAGGCT
TTCAGCTATG GCGTCATGAA TGCAGTGGAC GTCTTGGACA GTATCGAAAT GGAGTTTCGC
GCTAAACGGG ACCTCCTGCA GTCGCAATAC AACTTCATTA CCAGCCTGTT AGTGCTCTAT
CGCTGGAGTG GTCGACTAAA CGACACGGAC GTACGCCGCG TGAACAGCTG GTTGGTCCCT
CCCAGTTAG
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| Protein sequence | MWTSMFKLST LGVCLLVNAN IAMAANASVD LWALYLESRD TDPRILRAAA LERSSAGRQR
EAFGRLLPQL NANANFNRSQ RDDNLTRSQY DGQGYALGLS QLLYAPQAWR SYQKFSALTR
QSVFEHENAR IQASIDLVER YFATLAAEDE LRLVQAELAA TERNHVRLEA LFAKKMAKVT
DVLELKARVD LLNARSIEAA NQIEINKETI AELIGRPIEQ PLKRLATHPD FLAPQNDQVF
WVTTALRSNP ALQASEQALD AAQAAVAEAK AGHLPTLAFD INAQRSDIGY EGALTPRSDT
YVASFGLQIP LYSGGSTQAR VSSLYAELDA AQQEHEALRR QIMRETRTAY FNIEASLSRI
AALELALASA EKSRSATEQA FSYGVMNAVD VLDSIEMEFR AKRDLLQSQY NFITSLLVLY
RWSGRLNDTD VRRVNSWLVP PS
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