| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0675 |
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| Symbol | |
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| ID | 5109005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 749136 |
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| End bp | 750173 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501888 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001186175 |
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| Protein GI | 146305710 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.55095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACGA GACGCGATTT CCTGAAAACC GCCGCGGTCG GCACCGCTGC CCTCGGCTCG
GCGCACATCT ACGCCGCCGA GCCGAAGAAG ATCACCTGGC GCCTGCAGAC CTACGCCGGT
CCGGCGCTGG CCGAGCACGT GATCAAGCCG TCCATCGATG CCTTCAACAA GGCCGCCAAT
GGCCAGATGG AGATCCAGCT GTACTTCGCC GACCAGCTGG TGCCCACCGG CGAGCTGTTC
CGCGCCATGC AGCGCGGCAC CATCGACGCG GTGCAGAGCG ACGACGACTC CATCGCCGCG
CCGGTGGACG TCTCGGTGTT CGGCGGTTAC TTCCCCTTCG CCACCCGCTA CAGCCTGGAC
GTGCCGGTGC TGTTCGAGCA GTACGGCCTC AACGAGATCT GGGCCGAGGC CTATGGCGAG
GTCAAGGGCG TTACCTGGCT CGGCGCCGGC GCCTGGGACC CCTGCCATTT CGCCACGGTG
CAGCCGATCA CCAAGCTGGC CGACCTCAAG GGCAAGCGCA TCTTCACCTT CCCCACCGCC
GGCAAGTTCC TCGCCCGCTT CGGCGTGATT CCGGTGACCC TGCCCTGGGA GGACGTCGAG
GTGGCGGTGC AGACCGGCGA GCTGGACGGC ATCGCCTGGT CCGGCATCAC CGAGGACTAC
ACCGTCGGCT GGGCCAACGT CACCAAGTAC TTCCTCACCA ACAACATCTC CGGCGCGTGG
ATCGGCTCCT ACTTCGCCAA CTCGGACAAG TGGGCCGAGG TGCCCGAACA CCTCAAGACC
CTGTTCAAGC TGTGCATGGA CAGCTCCAAC TACTACCGCC AGCACTGGTA CTGGGGCGGC
GAGGCGCAGC TGCGCGTGGA GGGCGGCAAG CTGCAGCTGA CCTCCATCCC GGCCGAGGAA
TGGGCCACGG TGGAAGCCGA GGCGCTGAAG TTCTGGGACG AGATCGCCAA GACCAGCCCG
CGCTGCGCCA AGGTGGTGGA CATCTTCAAG AAGTACAACG CGCTGATGGC CAAGGCGGGG
GCGCCTTATC GCGGTTGA
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| Protein sequence | MSTRRDFLKT AAVGTAALGS AHIYAAEPKK ITWRLQTYAG PALAEHVIKP SIDAFNKAAN
GQMEIQLYFA DQLVPTGELF RAMQRGTIDA VQSDDDSIAA PVDVSVFGGY FPFATRYSLD
VPVLFEQYGL NEIWAEAYGE VKGVTWLGAG AWDPCHFATV QPITKLADLK GKRIFTFPTA
GKFLARFGVI PVTLPWEDVE VAVQTGELDG IAWSGITEDY TVGWANVTKY FLTNNISGAW
IGSYFANSDK WAEVPEHLKT LFKLCMDSSN YYRQHWYWGG EAQLRVEGGK LQLTSIPAEE
WATVEAEALK FWDEIAKTSP RCAKVVDIFK KYNALMAKAG APYRG
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