| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0503 |
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| Symbol | |
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| ID | 5108422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 540131 |
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| End bp | 541318 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501716 |
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| Product | gamma-butyrobetaine hydroxylase |
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| Protein accession | YP_001186005 |
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| Protein GI | 146305540 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2175] Probable taurine catabolism dioxygenase |
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| TIGRFAM ID | [TIGR02409] gamma-butyrobetaine hydroxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCCG TAGATCCCTC GCTCCAGGCC GCGCCCATCG CCGATTGGCG TACCTACCCG
ATCAGTGCCG ACCTGGTCGG CCTCAACGCT ACCCGCGACA GCCTGCAGGT CACCTGGAGC
GATGGCCGGG TCAGCCCCTT CCATTACCAG TGGCTGCGCG ACAACTGCCC CTGCAGCCAG
TGCGTCTACG GCGTGACCCG GGAACAGCTG CTGGAGATCG TCGACGTGGC GGAGGAGCTG
TCTCCACAGC GGACCCGCAT CGACGAGCAG GGCCATCTGC TGATCGACTG GCTGGGCGGT
CACCACAGCC GCTTCCATCC CGGCTGGCTG CGGGCCCACG CCTATGACCC GGCATCGCGC
GAAGAGCGCC AGGCGCAGCG TCCGCAACCG CAGCTGTGGG GCGCCGAACT GGCCGAGCAG
TTGCCGCGTT TCGACTACCA GGCGGTGCTC GAGGACGACG CTACCCTGTT GCGCTGGTTG
CTGGCGGTGC GCGATCTGGG CCTGACCCAG CTGGTGGCGG TGCCGGCCAG CGAGGGCGTT
CTGCTCCGGC TCGCCAAGCG CATCTCCTTC ATTCGCGAGA GCAACTTCGG CGTGCTGTTC
GACGTGCAGT CCAAGGCCGA TGCCGACAGC AACGCGTACA CCGCCTTCAA CCTGCCGCTG
CACACCGACC TGCCGACCCG CGAGCTGCAG CCGGGCCTGC AGTTCCTGCA TTGCCTGGTC
AACGACGCGA CGGGTGGCGA GAGCGTATTC GTCGACGGTT TCGCCATCGC CGAGGCGCTG
CATCAGGAGT CGCCCGAGCT GTTCGACATC CTGTGCACGA CGCCGGTGGA GTTCCGCAAC
AAGAGCCGCA CCAGCGACTA CCGCTGCCTG GCGCCGATCA TCGCGCTGGA TGCCGAGGGG
CGGATCGGCG AGGTGCGCAT GGCCAACTTC CTGCGCGGCC CGTTCGACGC GCCGGTCGAG
CGCATGCCGG CGCTGTATCG TGCCTATCGG CGCTTCATCG CCCTGACCCG CGAGCCACGC
TTCCGCCTGC AGCGCCGGCT CGAGGCCGGG CAGCTGTGGT GCTTCGACAA TCGGCGGGTG
ATGCACGCGC GCACCGAGTT CGACCCGGCC AGCGGCGCGC GGCATTTTCA GGGGTGCTAT
GTCGACCGTG ACGAGCTGCT GTCGCGGATC CGCGTGCTGC AGCGCTGA
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| Protein sequence | MNAVDPSLQA APIADWRTYP ISADLVGLNA TRDSLQVTWS DGRVSPFHYQ WLRDNCPCSQ
CVYGVTREQL LEIVDVAEEL SPQRTRIDEQ GHLLIDWLGG HHSRFHPGWL RAHAYDPASR
EERQAQRPQP QLWGAELAEQ LPRFDYQAVL EDDATLLRWL LAVRDLGLTQ LVAVPASEGV
LLRLAKRISF IRESNFGVLF DVQSKADADS NAYTAFNLPL HTDLPTRELQ PGLQFLHCLV
NDATGGESVF VDGFAIAEAL HQESPELFDI LCTTPVEFRN KSRTSDYRCL APIIALDAEG
RIGEVRMANF LRGPFDAPVE RMPALYRAYR RFIALTREPR FRLQRRLEAG QLWCFDNRRV
MHARTEFDPA SGARHFQGCY VDRDELLSRI RVLQR
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