Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0475 |
Symbol | |
ID | 5108394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 505976 |
End bp | 507874 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640501688 |
Product | citrate transporter |
Protein accession | YP_001185977 |
Protein GI | 146305512 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0471] Di- and tricarboxylate transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCCGTG CGCACCAATG CCCAGGCTCG CCGGCCACGC ACAACCGGCA TCTTTCGCGC CCCGCACAAG GACAGTTCCG CGCCATGACC CTCGACCAAG GCCTGATCTT CGCCATTCTC GTCGCCAGCA TGGGGCTGTT CATCTGGGGC CGCTGGCGTC ACGACGTGGT CGCCCTGGGC GCCCTGCTGG CCTGCGTGAT CGCCGGCCTG GTGAAGGAGG AGGAAGCCTT CACCGGCTTC GGCCACCCGG CGGTGATCAC CGTGGCCTGC GTGCTGGTGC TCAGCCACGG CCTGCAGAGC ACCGGCGCGG TCAACCGTCT GGCCCAGCGC CTGCTGCCCA GCGGCGCCGG CGTGCTGCTG TCGCTCGCGG CGCTGACCGG TCTCGGCGCC CTGCTCTCGG CCTTCATGAA CAACGTCGGG GCGCTCGCCC TGCTGATGCC CATCGCCCTG CAGATTGCCG CACGCCTGGA ATTGCCACCC GGCCGGGTGC TGATGCCGCT GGCCTTCGGC ACCATCCTCG GCGGCATGAC CACGCTGATC GGCACGCCGC CCAACCTGAT CGTTTCCAGC TTCCGCGCGC AACACGGCAA TGGCCCGTTC GCCATGTTCG ATTTCAGCCC GGTGGGCGTG GCGGTGGCGC TGGCCGGCGT GCTGTTCATC ACCCTGCTTG GCTGGCGCCT GGTACCCAGA CGCGAAGTGG GCAACGCCGC CAGCTTCGAT ACCGGCCGCT ACCTCACCGA GGCGCGCGTC AAGGAAGGCG GCAAGGCCCA GGGCAAGACC CTGCGCGAGA TCGAGCAGTT GCTCGACGAG GCCGACGCCC AGGTGGTGGC CATGGTGCGC AACAAGCTGC GCCTGAGCGC GCCCAACCCG CGCCGCGTGC TGCAGGCCGA CGACGTACTG GTGATCGAGG CCGATCCGCA GGAACTGGGT GAGGTGCTGG GCCAGCTCGA CCTGCTGCTG GAGGCCGAAC GCGAGGCCAA GGAAGCCGAG CAGCAGCGCA AGGACAACGG CGGCGAAACC GAAAAGAAGG AAGCCAACAG CGAGGAGCGC GGCCTGCTGG AACTGCTGGT CAAACCCGAC TCGCCGCTGA TCGGCCGCTC CGCCAGCAGC ACGCGCTTGC GCAGCCGTTA CTCCATCAGC CTGCTGGCCA TCTCCAGACA GAGCCACCGC TCGATCAAAC GCCTGCGTTC GACCCTGATC CAGAGCGGCG ATGTGCTGCT GATGCAGGGC AGCGCCGAGG ACGTCAGCGA GTTCGCCAGC GACTACGGCT GCGTGCCGCT GGCCGCCCGC GCCATCAACA TTCCCGATCC ACGCCAGGCC AATCTGGCCC TGGGCGTGAT GCTGCTGGCC ATCGCCACGG CTGCCTTCGG CCTGCTCTCG GCCGCGGTGG CCTTCTCCGC CGGGGTGCTG GCCTACATGC TGCTGCGCCT GATCCCGCTG CGCGCGGTGT ACGAAGCGGT CGACTGGCCG GTGATCGTGC TGCTCGGCGC GCTGATCCCG GTGGCCGGCG CCATGTCGGA AACTGGCGCC GCCGATCTGC TGGCGCGGGT GCTGATGGAG CATCTGGCCC AGGGCAATGC CATCGTCACC CTGACCCTGC TGCTGGTGGT GACCATGACC CTGTCGGATT TCATGAACAA CGCCGCCACC GCTGCGGTGA TGTGCCCCAT TGCCCTCAGC GCCGCCAGCC AGCTCGGCGT CAGCCCCGAC TCGCTGCTGA TGGCGGTGGC CATCGGCGCC TCGTGCTCCT TCCTCACCCC CATCGGCCAC CAGAACAACA CCCTGATCCT CAGCCCCGGC GGCTTCCGTT TCGGCGACTA CTGGCGCCTC GGCCTGCCGA TGGAGATTCT CGTGGTGCTG GTCAGCGTGC CGCTGCTGCT CTGGGTCTGG CCGCTGTAG
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Protein sequence | MRRAHQCPGS PATHNRHLSR PAQGQFRAMT LDQGLIFAIL VASMGLFIWG RWRHDVVALG ALLACVIAGL VKEEEAFTGF GHPAVITVAC VLVLSHGLQS TGAVNRLAQR LLPSGAGVLL SLAALTGLGA LLSAFMNNVG ALALLMPIAL QIAARLELPP GRVLMPLAFG TILGGMTTLI GTPPNLIVSS FRAQHGNGPF AMFDFSPVGV AVALAGVLFI TLLGWRLVPR REVGNAASFD TGRYLTEARV KEGGKAQGKT LREIEQLLDE ADAQVVAMVR NKLRLSAPNP RRVLQADDVL VIEADPQELG EVLGQLDLLL EAEREAKEAE QQRKDNGGET EKKEANSEER GLLELLVKPD SPLIGRSASS TRLRSRYSIS LLAISRQSHR SIKRLRSTLI QSGDVLLMQG SAEDVSEFAS DYGCVPLAAR AINIPDPRQA NLALGVMLLA IATAAFGLLS AAVAFSAGVL AYMLLRLIPL RAVYEAVDWP VIVLLGALIP VAGAMSETGA ADLLARVLME HLAQGNAIVT LTLLLVVTMT LSDFMNNAAT AAVMCPIALS AASQLGVSPD SLLMAVAIGA SCSFLTPIGH QNNTLILSPG GFRFGDYWRL GLPMEILVVL VSVPLLLWVW PL
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