| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0436 |
|---|
| Symbol | |
|---|
| ID | 5108357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 462619 |
|---|
| End bp | 463311 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640501651 |
|---|
| Product | OmpW family protein |
|---|
| Protein accession | YP_001185940 |
|---|
| Protein GI | 146305475 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3047] Outer membrane protein W |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.322877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTT CTAATTATAA AGTAATCGCG ATGCCGGTGT TGGTTGCTAA TTTTGTTTTG
GGGGCGGCCA CTGCATGGGC GAATGAAAAT TATCCGGCGA AATCTGCTGG CTATAATCAG
GGTGACTGGG TCGCTAGCTT CAATTTTTCT AAGGTCTATG TGGGTGAGGA GCTTGGCGAT
CTAAATGTTG GAGGGGGGGC TTTGCCAAAT GCTGATGTAA GTATTGGTAA TGATACAACA
CTTACGTTTG ATATCGCCTT TTTTGTTAGC TCAAATATAG CGGTGGATTT TTTTGTTGGG
GTGCCAGCTA GGGCTAAATT TCAAGGTGAG AAATCAATCT CCTCGCTGGG AAGAGTCAGT
GAAGTTGATT ACGGCCCTGC AATTCTTTCG CTTCAATATC ATTACGATAG CTTTGAGCGA
CTTTATCCAT ATGTTGGGGT TGGTGTTGGT CGGGTGCTAT TTTTTGATAA AACCGACGGT
GCTTTGAGTT CGTTTGATAT TAAGGATAAA TGGGCGCCTG CTTTTCAGGT TGGCCTTAGA
TATGACCTTG GTAACTCATG GATGCTAAAT TCAGATGTGC GTTATATTCC TTTCAAAACG
GACGTCACAG GTACTCTTGG CCCGGTTCCT GTTTCTACTA AAATTGAGGT TGATCCTTTC
ATTCTCAGTC TTGGTGCGTC ATATGTTTTC TAA
|
|---|
| Protein sequence | MSFSNYKVIA MPVLVANFVL GAATAWANEN YPAKSAGYNQ GDWVASFNFS KVYVGEELGD
LNVGGGALPN ADVSIGNDTT LTFDIAFFVS SNIAVDFFVG VPARAKFQGE KSISSLGRVS
EVDYGPAILS LQYHYDSFER LYPYVGVGVG RVLFFDKTDG ALSSFDIKDK WAPAFQVGLR
YDLGNSWMLN SDVRYIPFKT DVTGTLGPVP VSTKIEVDPF ILSLGASYVF
|
|---|
| |