| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0049 |
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| Symbol | |
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| ID | 5106723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 45496 |
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| End bp | 46575 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640501265 |
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| Product | YscU/HrpY family type III secretion protein |
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| Protein accession | YP_001185555 |
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| Protein GI | 146305090 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA AAACGGAGAA GGCGACGCCC AAGCAACTGC GTGATGCGCG GGAAAAGGGG
CAGATTGCGC AGAGTCAGGA CGTCAGCAAG CTGTTGATCC TGCTGATGGT CAGCGAAATC
ACCTGGAGCC TGGCCACGGA GAGCGTACAA CGCCTGCAGC ACCTGATGGC GCTTGCCATC
AATGCGACCG GGCAGCCGTT TCTGCGGATT GTGGGGCAAC TGGTCGACGA GGCCGTGACC
GTATTGCTCG GCTTCCTGAT CTTCAGTGTC GGTGTCGCCA TGGTGATGCG TCTGGCCGGA
GGCTGGGCTC AGTTCGGGTT TCTCTTCGCA CCCAAGGCAC TGAAGATCGA TTTCAACAAG
CTCAATCCGT TTCCCCAGCT CAAGCAGATG TTCTCTGCGC AGAACCTAAC CAACTTGCTG
ATGAGCATCC TCAAGGCTGC AGTCATCGGC ATCACGCTCT ACGTTCTGCT CTGGCCAGAG
CTGGGTACAT TGATCCTGCT GGCCAACTCC GACCTGGATA CCTACTGGCA ATCGTTGATG
GAGGTGTTTC GCTACATCCT GCGCTGCACC CTGGGTCTAC TCCTGGTGCT GGCTGCAGTG
GATTTCGGCC TGCAGAAATA CTTCCATGCC AAGAAACTGC GCATGAGCAA GGATGACGTG
AAGAAGGAGT ACAAGCAGTC GGAGGGCGAC CCGATGGTGA AGGGGCAGCG ACGCCAACTG
GCGCACGAAC TGCTCAATCA GCCGCCTTCG ACCGCGGCAA GGCCAGTGGA GGAGGCCGAT
ATGCTGGTGG TTAACCCGAC CCACTATGCC GTGGCCCTGT ACTACCGTCC GGGCAAGACA
CCCTTGCCGA TGATTCACTG CAAGGGCGAG GACGAAGACG CATTGGCCCT GATCGCGCGG
GCCAAGAAAG CCAGGATTCC CGTGGTGCAG AGCGTCTGGC TCGCGCGCAC CCTGTACAAG
GTCAATGCAG GACGCCATAT CCCCCGTCCG ACCCTGGAGG CTGTCGCCCA CATCTATCAG
TTGGTGAAAC AGCTGGACGA GGTGACCGAC GAAATCATCC AGGCCGACTC CGGGCTCTGA
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| Protein sequence | MSEKTEKATP KQLRDAREKG QIAQSQDVSK LLILLMVSEI TWSLATESVQ RLQHLMALAI
NATGQPFLRI VGQLVDEAVT VLLGFLIFSV GVAMVMRLAG GWAQFGFLFA PKALKIDFNK
LNPFPQLKQM FSAQNLTNLL MSILKAAVIG ITLYVLLWPE LGTLILLANS DLDTYWQSLM
EVFRYILRCT LGLLLVLAAV DFGLQKYFHA KKLRMSKDDV KKEYKQSEGD PMVKGQRRQL
AHELLNQPPS TAARPVEEAD MLVVNPTHYA VALYYRPGKT PLPMIHCKGE DEDALALIAR
AKKARIPVVQ SVWLARTLYK VNAGRHIPRP TLEAVAHIYQ LVKQLDEVTD EIIQADSGL
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