| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2612 |
|---|
| Symbol | |
|---|
| ID | 5080665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3033201 |
|---|
| End bp | 3034532 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640499796 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001184132 |
|---|
| Protein GI | 146293708 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTG AAACAAGCTT CACAAAACGT GCTTTCGAAC AGCTCGAAAT CGGTCAAAAA
CGCTTCAGAA TTGCGGATTT CGGCCATCGA GACTCAATTA ATGGCTTAAT CTTAGATGTT
TTCCCATCGG GAAAAAAGGT TTTTCGCTTT CGCCGCAAGC ATTTAGGTAA AGACGTCACA
GTGACGATCG GGGAGTTCCC GCATTTAACC ATAGAGAACG CCCGCAAACA GGCCAAGCAT
ATCGCCGTAG ACTTGGCCGA AGGGGTGAAT CCAAATGAAG CAAAGCGCCT TGCAAAACAA
GAAGCTGAGC GCAAAGAAGC CTTGTCGATC AGCGTTCAAC AGTTGTTTGA TTCCTTCGAA
GCTGAGTTTA TGGTCAAAAT CAAAACGGGT GAGCGGCGAC TCAATTCCCT TAAGGATATT
CAATCCACAT GGAAGAACCA CATTCAACCG CGCATTGCCC ATTTACCCGT TGAAAGTATC
ACTACTGTCG AAGCTGAAAA CCTGCTTAAG CTGATTATCA CCAAAAACTC TGCCGCTGTG
CGTAACAAAT GCCTGACCTT GCTCAAGTCG ATGTTCAACG AGCAACAAAT CAATCCCTTT
GGCCGCATTA AAAAATTGGC GGCGGTGAAG CGTGAGCGGA TTTTGAATCA GCATGAGGTG
CGGGCATTAC TTGAGTCGCT AGAATTTGAG CCGCCGCTTT ATCGTGATGT GGTCATGTTA
TTGCTGTTAA CAGGGCAGCG TAAAAGCTGT GTGTTTAGTA TGGAGTGGCG AGAGATTGAC
CATCAGCGCG GGATGTGGAT TATCCCGACC AGCAAGATTA AATCGAAAAA GCCCCATGCG
GTGCCGTTAA CAAAAGAGGT GATGGCAATC CTTGAGCGTC GAAGCCATGA AGCCGCTCAC
GGCGTTAAAT ACGTGTTCCC TGCCGAGCGT AGTCATTCAG GCCATATCAC CGAAAATGCG
GGTAAGGGGA GTTTTTGGTA TCGCATTACT GAACGGGCAG GGCTGCGGAG TCCTGAAAAG
TCAGCAACAG CGAAAGAGGA TAATGTCACT ATCCATGACT TAAGGCGAAC CATCGCCAGT
TGGAGTGTGA TGCGCGGTGG CAATATTCAA ACGACAAGTA AGTTGTTAGG TCATAGTGAT
ATCAGTATCA CCGCTAGTAC ATACGCTCAC TTAGATGTTG AGAATGTCAG GGCTGAGCTT
GGGATCACCA CAGCGCATTT ACTGGGGACA TTTGTGCAAG AGTCGAAGAT AGATAGATTG
GTGAAAGAGA TAGAACAGCT CTCTGATGAT GAAAAAAGAG AGCTGTTTTC AATATTATCC
AATTTAAGCT AG
|
|---|
| Protein sequence | MSIETSFTKR AFEQLEIGQK RFRIADFGHR DSINGLILDV FPSGKKVFRF RRKHLGKDVT
VTIGEFPHLT IENARKQAKH IAVDLAEGVN PNEAKRLAKQ EAERKEALSI SVQQLFDSFE
AEFMVKIKTG ERRLNSLKDI QSTWKNHIQP RIAHLPVESI TTVEAENLLK LIITKNSAAV
RNKCLTLLKS MFNEQQINPF GRIKKLAAVK RERILNQHEV RALLESLEFE PPLYRDVVML
LLLTGQRKSC VFSMEWREID HQRGMWIIPT SKIKSKKPHA VPLTKEVMAI LERRSHEAAH
GVKYVFPAER SHSGHITENA GKGSFWYRIT ERAGLRSPEK SATAKEDNVT IHDLRRTIAS
WSVMRGGNIQ TTSKLLGHSD ISITASTYAH LDVENVRAEL GITTAHLLGT FVQESKIDRL
VKEIEQLSDD EKRELFSILS NLS
|
|---|
| |