| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1994 |
|---|
| Symbol | |
|---|
| ID | 5078196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2280774 |
|---|
| End bp | 2281628 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640499153 |
|---|
| Product | UspA domain-containing protein |
|---|
| Protein accession | YP_001183514 |
|---|
| Protein GI | 146293090 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATG TGATTGCTTG TATTGACGGT TCAAATGTGA CATCCGCTGT ATGTGATGCC
AGTGGCTGGG CCGCCTTTCA ACTGAATGCC CCTGTAATCC TATTACATGT ATTGGATAAG
TCAGCCTATC CGATAGAGTC AGATCTGTCG GGAAATATTG GCCTAGGTAC ACGGGAGCAC
TTGCTCAATG AAATGGTTGA GCTCGAAGCG CGCCGGGGCA AGCTGGCACT CGAGCAGGGT
AAGTATATGT TGCAAGATGC GCAAACGCGC ATCGTGGAGG CACAACCTGC AGTCGTGGTT
AAAACCTTGC AGCGTCACGG CGATTTAGTC GAAACCCTGT TAGAGCAAGA ATCCCATGCC
AGATTGGTGG TGATGGGGCG TCAAGGGGAG CAACATCAAG ATCAAGCGCA GGCGATTGGC
AGCCATCTAG AAAACGTCAT TCGCACAGTT AAGCAGCCTA TTTTAGTGGT GATGACAGAG
TTTGAAGCAC CGAAACGATT TATGATTGCC TACGATGGCA GCATTACTGC GAAAAAAGCC
CTTAATCAAG TGCTAACAAG TCCACTCTTA AAAGGGCTTG AATGTCATTT GGTGATGGTG
TCTGATGCTC AATCACAGGC GACAGCAGAA CTGGCGTTGG TGACCGAATC TCTGATGGCG
GCGAATTTCA ATGTGGTTAC CGCTGTTTGT CAGGGAGAAG TTCAAACGGC TCTTGAGATC
TATCAACTTG AGCATCACAT CGATCTTATG GTGATGGGGG CCTACGGCCA TTCGCGGATA
AGAGAGTTTT TTGTGGGAAG CAATACCACA AAGATGATCA GTAAAAGCCA TATCCCATTA
TTATTATTGC GCTAA
|
|---|
| Protein sequence | MTNVIACIDG SNVTSAVCDA SGWAAFQLNA PVILLHVLDK SAYPIESDLS GNIGLGTREH
LLNEMVELEA RRGKLALEQG KYMLQDAQTR IVEAQPAVVV KTLQRHGDLV ETLLEQESHA
RLVVMGRQGE QHQDQAQAIG SHLENVIRTV KQPILVVMTE FEAPKRFMIA YDGSITAKKA
LNQVLTSPLL KGLECHLVMV SDAQSQATAE LALVTESLMA ANFNVVTAVC QGEVQTALEI
YQLEHHIDLM VMGAYGHSRI REFFVGSNTT KMISKSHIPL LLLR
|
|---|
| |