| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1680 |
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| Symbol | |
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| ID | 5079338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 1915276 |
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| End bp | 1917915 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640498829 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001183204 |
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| Protein GI | 146292780 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.85517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGTG GTATTCGGAA CTCTGTGATG ATGGAAAAAA AGTCAATATC TGAGCCACAG
ACCCCATTGA CCCAATGGCA AAATAGCTTG CCGTTTAAAT TTAGTCTTGT CCAACTTATC
ATCGCGAGTA TTTTGATTTT TAGCACAGCT TGGGTCATGT TACGCATTCA AAATCAGCAA
ATAACAGAAC AGCAGGCAGT ACTAAATCAG AATCATGGAC AGATTGTTAT TGCAAAATTG
CAGGAAATGA CCTCTCAAGT CGAAAATCTT GTCAATGCAA TTGCCAGTAT CGCTAAGTTA
TATCGCTATG ACCATGAGCA ACTCAGTAAG ACTATCCCCA CTTTGCTTGC GCTTGAAAAT
CAAAAGGATG TGATATCCGG CGGCGGTATT TGGCCCGAAC CGAGTGCCTT TAATCAACAA
AAGTTTCGCA ATAGTCTCTT TTGGTCGCGT AATATTCACG ATGAGCTCAT TAAGATAGAT
ACCTATAATG ATGACGCGTT CCCAAGTTAC CACACAGAAG CATGGTATCG CCCCACACGT
TATTTCCCCT CAGGAAAAAC CTTTTGGTCT AAATCTTATA TCGACCCAAG CACACAGGAA
CCAATGATTA CAGCCTCGGG TGCTGTCTGG ATGGACCATC AATTTATAGG CGCAGCAACG
GCCGATATCA GTTTAGAAAA ACTCAATACG CTACTGCGTA ATGCAATGAC GGATATCAGT
GGTTATGTGA TAGTGCTTGA TTATCACAAT CAGGTATTAG CTTATCCGCG TGGGAAAAAT
CATGCCGCGA TCTTGGACCA AGCAGCAAAC TCGTTGCTGA CATTTAATGA TCTGACAAAA
CAGCACCCAA ACTTTGATCC ACTTGCATTA GCCCTAAATA CGGCTGACAG TGCCTTTGTG
ACTAAAGCTA TTGCTGAACG TGTGTTTACC CAAGAACAAA TGGATAATCT CACCCGTTTA
ACAGCAGACA ATGAACGCAA AATGCTCACC GCAATTGTTA ATAATAATGC TCGCAATCAT
TTCACAACCC CTCAACAGCT TGCATCGGTT CCCTTAGCGA CAGATCCAAT ACTCAACACC
CCAGCATTAG CATCTATCTT TTTAATGCCC AATACCTACT GGAAGATATT GGTCGTGACA
CCCATTGCTC CGCTGCAGGA TACAGCCAAA CATTTAGTTG AAAAAATAGG AATATATTTA
GTTTTAATTC AACTCATTGG GTTAATTATC TTGTTCATAT TGCAACATAG GTTAATCATT
ACCCCAATCA TGAAAATGGT TGAAGCATTA AAACGTGACG ATCCTACTGC CATCGAATTT
AAGGCTAAAC AACGTCACGA TGAAATAGGC TTACTGGCAA AAACATTACT CTCACGCACT
CAGCAACTCG ATGTCGCCAT GGCAAGCCTT GATGCAAGCA ATCTCGCCCT AGAACAGCAA
TTGAAAACTC AGCAACTATT CCAACAAGAA TTAAATCACC ATAAAGAACA ATTAAGATCC
CTACTTAAAT TTTCTAAACA CCTCATTTAT ATTAAAGATT TAAGTGGTAA ATACACGTTA
GTTAACGATA AATATTGCGA AGTACTTGGG ATTGAACGCA GACGAATTAT CGGTGTGTCT
GACTTTGAAT TGTTTCAAAG TCAATTAGCA CAGACATTTC AAAAAAATGA TCAGCGAGTC
ACCCAAAACC AAGATGCCAT TCATTTTGAA GAATCAATTC CGACGCCTCA CGGATATCAG
GTCTATCAAA TGACAAAATT TGATATCAGG GATGATGAAG ATAATTCTAT TGCCGTTGGT
GCTATCGGTT TCAATATGGA TCTCAAAAAA CGCCAAGAAC AAGAGCAAGA AAAACGATTC
CAGAACCAAG CTGCTCACCT ACAAAAGCAA CAGAGTAAAA TGCAGATAGT CAACGATGAG
AATAATGCTC TGAAACAACA GCTTGCAGAG TTTAACAAAG CGTTCGAGAT GCAATTCCAA
ATCAACCTAA GCAAAGCACA AAGCCAAAAG CTAATGCAAA ATTTCCTTGC TGAAGTCATC
ACGCAAATAA TGCAAGAACA AGATCGCTTA CTTGCACAAA TCTGTCAGAC ACAAGCCAAT
GGGGGTGATG AATCTCAAAT TGCCATTACT GACATGATGA CAGTCCAAGC CAAAAGGCTT
AGGCACATAG CACAACTTTT TAACGCGCAT CAAAATGATG TCAGGCCATT ACATTTAGCG
CTGTTTATGC GCCAATTACT GGATTTATTA CAAGTACAGT TCATTCGCGC TAATGTCACT
GTGTGCTTAA CATGTGATGA AAACCTGATT ATCGATGGCA ACTCATGGCA ATATCTGCAA
CTCTTCTATC GGCTACTCAA CAACACACTC AATCATGCCT TTAAAAACCA TCATCAAATA
CGGGAAATCA CCATTCATCT TCAAAGAAAT GCTAATGAAC TCCAAGTGGA ACTCACTGAT
AATGGAATTG GTATGACAGA CCAACAACTT TCACAGTTAC GGCAAAATAT GGCACAAAAT
CTCTGCCTAG GGACACTCAC TTGCTTAAAT TTATGGATGA AAAATGACCT AAAAGGACAA
CTCACCATAC AAAGTGAGCT TAATAAAGGG ACTCAAATTC TCTGCCGTTG GCCATGTTAG
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| Protein sequence | MKSGIRNSVM MEKKSISEPQ TPLTQWQNSL PFKFSLVQLI IASILIFSTA WVMLRIQNQQ
ITEQQAVLNQ NHGQIVIAKL QEMTSQVENL VNAIASIAKL YRYDHEQLSK TIPTLLALEN
QKDVISGGGI WPEPSAFNQQ KFRNSLFWSR NIHDELIKID TYNDDAFPSY HTEAWYRPTR
YFPSGKTFWS KSYIDPSTQE PMITASGAVW MDHQFIGAAT ADISLEKLNT LLRNAMTDIS
GYVIVLDYHN QVLAYPRGKN HAAILDQAAN SLLTFNDLTK QHPNFDPLAL ALNTADSAFV
TKAIAERVFT QEQMDNLTRL TADNERKMLT AIVNNNARNH FTTPQQLASV PLATDPILNT
PALASIFLMP NTYWKILVVT PIAPLQDTAK HLVEKIGIYL VLIQLIGLII LFILQHRLII
TPIMKMVEAL KRDDPTAIEF KAKQRHDEIG LLAKTLLSRT QQLDVAMASL DASNLALEQQ
LKTQQLFQQE LNHHKEQLRS LLKFSKHLIY IKDLSGKYTL VNDKYCEVLG IERRRIIGVS
DFELFQSQLA QTFQKNDQRV TQNQDAIHFE ESIPTPHGYQ VYQMTKFDIR DDEDNSIAVG
AIGFNMDLKK RQEQEQEKRF QNQAAHLQKQ QSKMQIVNDE NNALKQQLAE FNKAFEMQFQ
INLSKAQSQK LMQNFLAEVI TQIMQEQDRL LAQICQTQAN GGDESQIAIT DMMTVQAKRL
RHIAQLFNAH QNDVRPLHLA LFMRQLLDLL QVQFIRANVT VCLTCDENLI IDGNSWQYLQ
LFYRLLNNTL NHAFKNHHQI REITIHLQRN ANELQVELTD NGIGMTDQQL SQLRQNMAQN
LCLGTLTCLN LWMKNDLKGQ LTIQSELNKG TQILCRWPC
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