| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1522 |
|---|
| Symbol | |
|---|
| ID | 5079581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1738820 |
|---|
| End bp | 1740064 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640498655 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001183046 |
|---|
| Protein GI | 146292622 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAATG CTAATAAAAT CGCAGCCCTA TTATTGCTCT CTTTATTTGG CAGTACAGTT
TCATCAGCAA TTGCTGCTGA AAAGTGTGAA ATTGATAGCC GCCAATCTAA AGCCGTAGGT
GAAAGTGCTG CAAAAAAGGT TCAGAAATCT TTTGAAGCTT ATACTAATGG TCAGCTTGAT
GAGGCCATTT CTATATTGCT TGAAGCAAAT GCTAAGAATG ATTTCGATAA AGCGTATGTT
GCACGTATGC TAGGTAACTT TTATGCCGAA AAAGGCAAAA TGGATACTGC GATCAAATAC
CTAAAGCAAG CTGTAGAAGC GGATATTTTA GGTGGAACGG ATCACGCTGC AACATTACGT
CTCTATGCTG ATTTGTTGTT ACAAGAGAAG AAGTTTAAGG AAGCTATTCC TTATTACTAC
AAGTGGATGG AATTCACCTG TAAAACTGAT GCTCAAATGT ATCGCCGTAT TGGTATTGCA
CATACAGAGC TAAAACAGTG GGATAAAGTG ATTGAAGTGG CCGACAAAGG CATTTCTCTT
GCTTCATCTC CTGATAAAGG TTTGTATCAG ATGAAGCTAA CGTCTTACTT CAATCAGAAG
AAGTATAAGC AAGCCGTTGG CGTGTTAGAA ACCATGGTGC CTTTGTTTCC AGAAGATGGC
AGATTATGGG TTCAATTAGC ACAGTTTTAT CTGATGGTAG AGGATTACGA TAAATCACTT
GCGACTTACG ATTTAGCCTA CAGAAATGGT TTCTTAGCAG ATAGTGCGAG TAATATTACT
CGTTTAGTGC AACTGATGGC ACAGAAAGGT GCTCCATATC AGGCTGCTAA AATCTATCAT
AAGCACATTA AGTCTGGTTT AATCGCGCAA GAAGCTAAAT CTTTTGAGAT TTTGGCTGGT
TTCTACCAAA ACGCAAAAGA GTTTAAAGAG GCCGCTGAGT TCTATGGTAA GGCTGCTGCT
ATCAGCAATG ATGGTAAGCT TTACTTAAAA CAAGGTCGTC TACTGAGCTT AGATGGAAAT
TATACTGCTG CGATACCTGT CCTTGAAAAG GCAATATCGC TAGGTATTGA TCATCCAGGT
GAGGCAAACT TTGAATTGGC ATTAGCTCAT TTAAGTTTGA AGCAATATAA GTCTGCTTAT
AACCGTGCAC AATTGGCGGC AAAAGATAAG AAGACTGAAA AGAGTGCAAA TAGCTATATC
TCTTATATTA AAGAGAAAGC TCGTATGCAT AATGTTGCGC TTTAA
|
|---|
| Protein sequence | MRNANKIAAL LLLSLFGSTV SSAIAAEKCE IDSRQSKAVG ESAAKKVQKS FEAYTNGQLD
EAISILLEAN AKNDFDKAYV ARMLGNFYAE KGKMDTAIKY LKQAVEADIL GGTDHAATLR
LYADLLLQEK KFKEAIPYYY KWMEFTCKTD AQMYRRIGIA HTELKQWDKV IEVADKGISL
ASSPDKGLYQ MKLTSYFNQK KYKQAVGVLE TMVPLFPEDG RLWVQLAQFY LMVEDYDKSL
ATYDLAYRNG FLADSASNIT RLVQLMAQKG APYQAAKIYH KHIKSGLIAQ EAKSFEILAG
FYQNAKEFKE AAEFYGKAAA ISNDGKLYLK QGRLLSLDGN YTAAIPVLEK AISLGIDHPG
EANFELALAH LSLKQYKSAY NRAQLAAKDK KTEKSANSYI SYIKEKARMH NVAL
|
|---|
| |