| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3593 |
|---|
| Symbol | |
|---|
| ID | 5085745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | + |
|---|
| Start bp | 483274 |
|---|
| End bp | 484986 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640485151 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001169767 |
|---|
| Protein GI | 146279609 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.185956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.226258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGG ATCCGACTTT CGACGTCGCC ATCGTGGGCA GCGGTCCCGC CGGTCTGGCC
GTTGCCAGCC GCCTTGTCGG CCGCGGCCTC TCTCTCGTTC TGATCGAGGC TGGCAACGCC
GATCGCGACC GGCAGGACGA ACAGGACAGC CTCTCCGCCG AGAATGAGGT GGGGCCGAAA
CATCCGGCTG CGCATCTCTA CCGCCGGCGG ATGCTGGGGG GATCCTCGAC CGTCTGGGGC
GGGCGCTGCA TTCCGTTCGA TCAGGCCGAC TATCTCATCG GCGGCGACGG GACCGGCTGG
CCCATCGACC CCGCCGAGAT CGAGCGCCAC CAGCGGGTGG CGGCAGAGTT CCTCGACTGC
GGCGAGCCGC AGTTCGACGA GGCGGCCTTC GAGACGCCCG CATGGTGGAG CCGCTCTCCG
CGGATCGACC TCGACCTTGA CCTGATCGAA CGGTTCTCGC GCCCGACAAA CCTCTGGCGC
AAGATGCGCG ACAGCCTGCG CGCGCGGAGC GACCTCAGGC TCCTCGCGGA TCATGTGGTG
GTGCGGGTGG ACCTCTCGTC CGATGGCACC CGCGTCGAGG GGCTGCGGAC GATCGACCGC
CGCTCGGGAT CCGGCGACCT TCTGCGCGCA CGTCATGTGG TTCTTGCCTG CGGAGGGATC
GAGACCACCC GGCTGCTCCT GGCCTCGAGG AACGTCCAGC CGCGCGGGAT CGGCAACCAC
AGCGATCAGC TTGGCCGCCA CTACATGACG CATCTCATCG GCGATGTGGG CGAGCTGGAC
CTTTCGCCCG CCTTCGATCA GGCGCGCATC GATTACCGCC GGACCCGGGA CGGGATCTAT
GCCCGCAGCC TGATCCGGCT CTCGCCGGCC CTCCGCCTGA GGGAGCGCCT GCCGAATGCG
GTCTGGCGCC CGGTGTCGCC GCCCTTCTGG AACCCGTCCC ATCACGATCC GATCCTGTCG
GCGGTCCATC TGGCCAAGGC GATCCTTCCC AAGGAGTACC ACGGCCATCC CGCCGAGGCG
CTCGCGCAGC GGAACGGCTG GCGCGACCCG GCCGCCCATG TCGCCAACAT CCTGCGCCAT
CCGGGCACTC TGGCCGCCTA TGTGCCGGTG ATCATGGCAA AGCGCATTCT CGCCCGGCGC
AAGCTGCCCT CGGTGTTCCT GCTTCGCCCG GACCGTCACT ACCGTCTGGA GATCAATGCC
GAGCAGCTCC CGGATCCGTC CTCGCGCATC ACGCTGGGCG ACAGCCGGGA CCGCTGGGGC
ATGCCGCGGA TCCGCCTCGA CTGGCAGGTG AACGGTGCAA CCCTCGAAGG CGTGCGCCAG
AGCCTCGCCC ACCTCGCCGG GCTGATGCCG AAACACGGGG TTGGCCGCCT TCTCATGCAG
CCCGACCAGG TCGCCGAGGG GCTGGTCTCG CAGGGCGGTC ACCACATCGG CACAACGCGG
ATGGGCAAGT CCCCGGAGAG GGGCGTGGTG GACAGCGATT GCACCGTCTT CGGCGTGCCG
AACCTCCATA TTGCGGGGGC ATCGGTCTTC CCGACTTCGG GGGCGGTGAA CCCGACGCTG
CTGCTGACCT GCGTGGCCTT CCGCCTCGCC GATCATCTGC TTGCCCGACT TGCGCCCGCA
CCCGTCCTTG CGCTTGCCAC CTCCGAACCC GCCCCGCCGC GTCCGCTCGC CGAGCTGCCC
CCGGTCGCGG CCGCCGTGCA GGCCCTACCC TGA
|
|---|
| Protein sequence | MEADPTFDVA IVGSGPAGLA VASRLVGRGL SLVLIEAGNA DRDRQDEQDS LSAENEVGPK
HPAAHLYRRR MLGGSSTVWG GRCIPFDQAD YLIGGDGTGW PIDPAEIERH QRVAAEFLDC
GEPQFDEAAF ETPAWWSRSP RIDLDLDLIE RFSRPTNLWR KMRDSLRARS DLRLLADHVV
VRVDLSSDGT RVEGLRTIDR RSGSGDLLRA RHVVLACGGI ETTRLLLASR NVQPRGIGNH
SDQLGRHYMT HLIGDVGELD LSPAFDQARI DYRRTRDGIY ARSLIRLSPA LRLRERLPNA
VWRPVSPPFW NPSHHDPILS AVHLAKAILP KEYHGHPAEA LAQRNGWRDP AAHVANILRH
PGTLAAYVPV IMAKRILARR KLPSVFLLRP DRHYRLEINA EQLPDPSSRI TLGDSRDRWG
MPRIRLDWQV NGATLEGVRQ SLAHLAGLMP KHGVGRLLMQ PDQVAEGLVS QGGHHIGTTR
MGKSPERGVV DSDCTVFGVP NLHIAGASVF PTSGAVNPTL LLTCVAFRLA DHLLARLAPA
PVLALATSEP APPRPLAELP PVAAAVQALP
|
|---|
| |