| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1258 |
|---|
| Symbol | |
|---|
| ID | 5084431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 1298521 |
|---|
| End bp | 1299693 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640482816 |
|---|
| Product | homocitrate synthase |
|---|
| Protein accession | YP_001167464 |
|---|
| Protein GI | 146277305 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGAC AACAGTCCGC GGCCAGCTTC CTGACCCAGA GCCCGCTGGC CCCGGTCGCA
CTCTGCGACA CCACCCTGCG CGACGGCGAG CAGACGGCGG GCGTGGCCTT CTCCCGCACC
GAAAAGCGCG CGATCGCCGA GGCGCTGCAG GCTGCCGGCG TGGCCGAGAT CGAGCTGGGC
GTGCCCGCGA TGGGCGAGGA TGAGCGGGCC GACATCCGCG CGGTGGCGGC GGTGCTCAAG
GGGGCGGCGC CCGTCGTCTG GTGCCGGTTG CGCGCCGAGG ATCTGGCCGC CGCGCAGCGC
ACGGGGGTCG TGCGGCTCCA TATCGGCGTG CCGACCTCCG AGCGGCAGAT CACGGCCAAG
CTCGGCAAGG ACGCGGCCTG GGTGCGCGAC AAGGTGGAGA AGCTGGTCCG CGCCGCTTCC
TGGGCCGGGC ACAAGGTCTC GGTGGGCGCC GAGGATGCCT CGCGCGCCGA TCCGTTCTTT
CTGGCCGAGA TCGCCCATGT CGCGGCCGAG GCCGGCGCCA TCCGCTTCCG CATCTCGGAC
ACGCTGGGCG TGCTCGACCC GTTCGCGACC CATGATCTCG TGAGCCGGGT GGTGACGCGC
TGCCCGCTGC CGGTCGAGTT CCACGGCCAC AACGATCTGG GCATGGCCAC GGCCAACAGC
CTCGCGGCCG CCCGCGCGGG GGCTTCGCAT CTGTCGGTGA CGGTGAACGG TCTGGGCGAG
CGGGCCGGCA ACGCCGCGCT TGAGGAGGTG GCGGCCGCGC TCGAGGCGTC GGGCCGGGCC
ACGGGGATCG CGCTCGGCCA GCTCTGCGGG CTCTCGGACC TTGTCGCCCG TGCCTCGGGC
CGGCCCGTGC CGCTGCAGAA GCCGATCGTG GGCGAGGCGG TCTTCACCCA CGAGAGCGGC
ATCCATGTCG ATGGGCTGTT GAAGGACCGC GCCATCTACG AAAGCGCGGC CCTGCGCCCC
GAGCGGTTCG GCCGCAGTCA CCGGATCGCC ATCGGCAAGC ATTCCTCGGT GTCGGGCCTT
GCGCGGGCTC TCGCGGATGC GGGCCTGCCC GCGGACGCGG CGACGCTCGG CGCGCTCTTG
CCCGCGCTGC GCGACTGGGC GGCCGAGGCC AAGCGCGCGG CCACGGCCGA CGATCTGGCG
GCGCTGCTCG CCAGCCTCAC GGAAACCACC TGA
|
|---|
| Protein sequence | MSRQQSAASF LTQSPLAPVA LCDTTLRDGE QTAGVAFSRT EKRAIAEALQ AAGVAEIELG
VPAMGEDERA DIRAVAAVLK GAAPVVWCRL RAEDLAAAQR TGVVRLHIGV PTSERQITAK
LGKDAAWVRD KVEKLVRAAS WAGHKVSVGA EDASRADPFF LAEIAHVAAE AGAIRFRISD
TLGVLDPFAT HDLVSRVVTR CPLPVEFHGH NDLGMATANS LAAARAGASH LSVTVNGLGE
RAGNAALEEV AAALEASGRA TGIALGQLCG LSDLVARASG RPVPLQKPIV GEAVFTHESG
IHVDGLLKDR AIYESAALRP ERFGRSHRIA IGKHSSVSGL ARALADAGLP ADAATLGALL
PALRDWAAEA KRAATADDLA ALLASLTETT
|
|---|
| |