| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0299 |
|---|
| Symbol | |
|---|
| ID | 5084157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 296373 |
|---|
| End bp | 296939 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640481854 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001166514 |
|---|
| Protein GI | 146276355 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGAG GCCTGCCGAT CCTCCTTTCC TGCGTGATCC TTGCGGCCTG CGGAGCGCCG
GACGCGCTGT CCCGGCAAGC GGTGGCGCGC AATGCACCCT TTGCCGTGGA TCCCGGGCGG
AACGGGGTCG ATGGGCTGCT CGTGGGACAT CGGCTTCTGG CGGCGGGCGA GGCCGAGCTG
GCCCTTCGGG CCTACCTCCG CGCGGCGTCC GAACAGGGGA TCAACGCCGA CGTCCTCTCG
GCGCTCGGCT CGGCGAACCT GCAACTCGGG CGGCTGAACC AGTCCGAACA GTTGCTGCGG
CAGGCGATCC AGATGGATCC GGCCTTCGTG CCGGCTGTCA ACAATCTGGG CGTCGTCCTG
ATGGAGCGGG GACGGACGGC CGAGGCGAGG CTCGTCTTCC AGCAGGCCTT CGCGCTCGAC
AGTGGCGCAA CGGACGCCAT CCGCGAAAAT CTGCAGCGCG CCATCGCGAA AAGCGCCTCG
ACCCTTTATC CGGAAGAGGA AGAGCGACAC GAGTTCTCCC TCGTGCGGCG CGGGCAGGGG
CAGTATGTGC TGCTTTCGCA GCTCTAG
|
|---|
| Protein sequence | MTRGLPILLS CVILAACGAP DALSRQAVAR NAPFAVDPGR NGVDGLLVGH RLLAAGEAEL
ALRAYLRAAS EQGINADVLS ALGSANLQLG RLNQSEQLLR QAIQMDPAFV PAVNNLGVVL
MERGRTAEAR LVFQQAFALD SGATDAIREN LQRAIAKSAS TLYPEEEERH EFSLVRRGQG
QYVLLSQL
|
|---|
| |