| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0013 |
|---|
| Symbol | |
|---|
| ID | 5082274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 14722 |
|---|
| End bp | 16746 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640481568 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_001166230 |
|---|
| Protein GI | 146276071 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0471043 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGGG CGCGGTGGCT GTTCGCGGCG GCGGCAGGCC TGTTCCTCGC CGCCGCCGCC
CGCGACGGGT TCGACGGCTT CATCGCCGCG ACGGACATGC CGCCCCTCGC CCTGCAGACC
TCGGTCGAGG TCGAGGCGCG CGACGGCACG CTCCTGCGCG CCTACACGGT CGCCGACGGC
CGGTGGCGGC TGGAACCGGG GCCGGTCGAT CCCTTGTTCC TGAAGATGCT GGTGGCCTAT
GAGGATGGCC GCTTTGACCA CCATCCGGGA GTGGACGGCC GGGCCTTGCT GCGCGCGGGC
TGGCAGGCGC TGCGCCATGG GCAGGTCGTC TCGGGCGGCT CGACGCTGAC CATGCAGGTC
GCGCGGTTGC TGGAAGAGAG CGGCACCGGA AGGATGGCGG GCAAGCTGCG GCAGATGCGT
GTCGCGCTCG CGCTGGAACG GCGACTGTCG AAGCCGGAGA TCCTGTCGCT CTACCTCCGC
CTTGCGCCCT ATGGCGGCAA TCTCGAGGGG GTCCGGGCGG CCTCGATCTC CTATCTCGGC
AAGGAGCCCG GCCGGCTGAC CGCAGCCGAG GCGGCGCTTC TGGTCGCGAT CCCGCAATCG
CCCGAGAGCC GGCGACCCGA CCGCCACCCC GAGAGGGCCG AGGCGGCGCG GGCCCGCGTC
CTTGCCCGGG CCGTGCGGGC GGGCGTGATC GAGGCCGAGC GGGCCGAGGC CGCCCTGCGC
GAGCCGGTGC CCCGCGCGCG CAAGCCCTTC CCCGCCCTCG CGCCGCATCT GGCCGACCGC
GTGGTGAAGG CCGATCCCTT GCGCCAGCAG CATCGCCTGA CGCTGGACGC GGCCCTGCAG
AAGCGGCTCG AGGCGCTGGC CGCCGAGACG CTCGAGGCGC GGGGCGAGCG ACTTCAGGTG
GCGATGCTGG TGGCCGACCA CCGCTCGGGC GAGATCCTCG CCTCGGTCGG ATCGGCGGCC
TATCGCGCCG ATCGGCGGCA GGGCTTTCTC GACATGACCG TGGCGCTGCG CAGCCCCGGC
TCGCTCCTCA AGCCCCTGAT CTACGGGCTC GCTTTCGACG AGGGCCTCGC CCATCCGGAG
ACGCTGCTCG ACGACCGGCC GATGGATTTC GCGGGCTACC GGCCGCAGAA CTTCGACCGG
ATCTTCCGCG GCGAAATCCG CGCGCGCGAG GCGTTGCAGC TCTCCCTCAA CCTGCCCGCG
GTCGCGCTGA CCGATGCGCT GGGACCGGCG CGGCTTCTGT CGGCGCTGGA GCAGGCCGGC
GTGAAGCCGG TGCTGCCGGG CGGGCAGCCG GGCCTCGCCG TGGCGCTGGG GGGCGTAGGG
GTCACGCTGT CCGACATGGT GCAGCTCTTT GCGACGCTGG CGCGGGGCGG CGTGGTCCTG
CCGCTCCATG TCGCGGGCGA GGGCGCGCCG GGGCGCCGGC TTCTGTCCGA GGTGTCGGCC
TGGCAGGTGG CCGACATCCT CGCGGGTCTG GCGCCGCCGC CCGGATCGCC CGCGAACCGG
CTGGCCTACA AGACCGGCAC GAGCTACGGC CACCGTGACG CCTGGGCGGT GGGGTTCGAC
GGACAGCATG TGGTCGGCGT CTGGCTCGGG CGGGCCGACG GAACGCCGGT GCCGGGTGTC
TTCGGCGCCG ATCTGGCGGC GCCGGTTCTG TTCCGCACCT TCGCCCGGCT GAAGCCCGCG
CTCGATCCGC TGCCGCCCCC GCCGCGCGCG GCCCTGACCG TGAGCAACGC CGAGTTGCCC
CAGCCGCTCC GCCGGTTCCG CTCGCGTCTT GCGGCCTTCC AGACGGCGGG CGGGCCGCAG
GTCGCCTTCC CGCCCGACGG GGCCGAGGTC GAGCGGCTGC GCGGCGGCCT GAAGGTGAAG
GTCGAGGGCG GGGCCGCGCC CTTCACCTGG CTTGCCAATG GGGCGCCGGT CGCGGTCTCG
CTCGGCGGGC GCGAAACGAT GCTCGACCTG CCGGCGGGAT TCCTCACCCT GTCGGTGATC
GACGCGGACG GCCGCTCGGC CCGGACAAGC GTCCGGCTGC GCTAG
|
|---|
| Protein sequence | MIRARWLFAA AAGLFLAAAA RDGFDGFIAA TDMPPLALQT SVEVEARDGT LLRAYTVADG
RWRLEPGPVD PLFLKMLVAY EDGRFDHHPG VDGRALLRAG WQALRHGQVV SGGSTLTMQV
ARLLEESGTG RMAGKLRQMR VALALERRLS KPEILSLYLR LAPYGGNLEG VRAASISYLG
KEPGRLTAAE AALLVAIPQS PESRRPDRHP ERAEAARARV LARAVRAGVI EAERAEAALR
EPVPRARKPF PALAPHLADR VVKADPLRQQ HRLTLDAALQ KRLEALAAET LEARGERLQV
AMLVADHRSG EILASVGSAA YRADRRQGFL DMTVALRSPG SLLKPLIYGL AFDEGLAHPE
TLLDDRPMDF AGYRPQNFDR IFRGEIRARE ALQLSLNLPA VALTDALGPA RLLSALEQAG
VKPVLPGGQP GLAVALGGVG VTLSDMVQLF ATLARGGVVL PLHVAGEGAP GRRLLSEVSA
WQVADILAGL APPPGSPANR LAYKTGTSYG HRDAWAVGFD GQHVVGVWLG RADGTPVPGV
FGADLAAPVL FRTFARLKPA LDPLPPPPRA ALTVSNAELP QPLRRFRSRL AAFQTAGGPQ
VAFPPDGAEV ERLRGGLKVK VEGGAAPFTW LANGAPVAVS LGGRETMLDL PAGFLTLSVI
DADGRSARTS VRLR
|
|---|
| |