Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_3530 |
Symbol | |
ID | 5077679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_009427 |
Strand | + |
Start bp | 145800 |
End bp | 148157 |
Gene Length | 2358 bp |
Protein Length | 785 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640481254 |
Product | TonB-dependent receptor |
Protein accession | YP_001165916 |
Protein GI | 146275756 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTGT CACGTGCAAT CCAGTTGATG AGCGGTCTTT CCGCCATCGC GCTCGCGGCT GTTCCCGCCG GGGCAATGGC GCAGGCCGCG CCCGATCAGG CCCAGGCCGC TGATGCGCCC ACCGGCGGCA TCGGCGAAAT CATCGTCACC GCGCAGAAGA AGGCGGAAAG CATCCAGACC GTGCCGATCT CGATCGCGGC GGTCGGCGGC GAACAGCTTT CGGCAATGAA CGTCACCACG CTCCAGGCAC TTCAGGGCTC GGTCCCGAAC GTCCAGATCG ACAACTTCGC CAATACGCCC AACAACGCGG TCTTCACCAT TCGCGGCATC GGCGTGATCG AACCCGATCC CTATGCCGGC AACACCGTGT CGATCGTGGT CGATGGCGTG CCGCAGTTCT TCTCGATGGG CGCGCTGCTC GACACCTACG ACACCAACCG GGTCGAGATC CTGCGCGGTC CCCAGGGCAC CCTGTTCGGC GCAAACACCA CCGGCGGCGT CGTCAACGTC GTGACCAACC AGCCGGACGG CAAGTTCGAC GGCTACGTCA AGGGCACCTA CGGCAACTGG AACCGCTTCG ACATCAGCGC CGCCGTGGAA GCGCCGCTGG TCGAGGACAC CCTCAGCCTC AAGGTCTCGG GCATCCACAC CCAGCGCGAT GGCTGGACGA CCAACGTGTG GAACGGCGAA GACATGGGCC GCAAGAACGT CGATGCGGTG CGCGGCCAGC TCTACATCAC GCCCAACGCC GATCTCAGGA TCACGCTCCA GGGTGAATAC GTCGCCGCGC GCAACGGCGC GCCCATCGTC GTCAACGGCG GCCTGCCCGG CGAAGGCAAC TACGTTCCCG AAGGCACGTT CTGGAACGGC GCCAAGCTGC CGATGTACCA GAGCCCCTGC TCGGTCGAGG GCCAGCCCTG CAAGGCGCCC GACAAGTACT ACTCCGGCAA CAACGAAGTG CCCGACCAGT CGGACATGAC GACGAAGTTC TTCGTCGGCA CGATCCAGTA CGACAACACC CCGCTGGGCG ACATCACCGC GATCACCGGC TACAAGCGCT TCACGCTGTT CGAATACACC GACCAGGACG GCACCGCGAA GACCAACAAC GCAACGCGCC GCCGCACCCG CGGCTGGCAG TTCAGCCAGG AACTGCGCAG CGCCTTCGAG GCGGGAGACA ATTTCAACGC CGTCGCGGGC CTGTTCTACC TGAAGACGCA CTACAACCAC TACCAGATGT ACCACCTGGA CTTCGCCCTT CCCGGCCTCG TCCAGTACAA CGAACAGGAC CAGGGCACGG AATCGTTCTC GGCCTTCCTG CAGACCTACA CCCAGCTTAC CGACCAGCTG AAGCTGTCGG CCGGCGTGCG CTACACGCAT GACAGCGTGA ACGCCCGCTC CACGCTCGAC TACGGCGTCG GCGCGCCCGC GCTCACCGAT CCGAACTGGG CCATCATCCC GACCATCGTC GTCGATGGCG AGACTCTCCA GGTCGGCCGC GACCTTCGCA CCGGCCCGCA CGACATCGAC GTCGGCGGCA AGAAGAGCTG GGACAACGTC GGCTGGAAGC TCGGCCTCGA TTACGAGATC GGCCAGAACC AGATGGTCTA TGCAAGCTGG GCGCGCGGCT TCAAGTCGGG CGGCTTCACC GGCCGCATCG GCACCGCGTC GGACGGCGAC ACGCCCTACG GCCCGGAAAA GGTCGATACC TTCGAGGTGG GCCTCAAGGC CGACTTCCTC GACCGCCACG TGCGCACCAA CCTCGCGGTG TTCTACACCA ATTACCGCGA CATGCAGGTC GCCCAGATCT ATTTCGATCC CGATACCAAC ACTCAGGGCA ACCGCATCCT CAACGCCGCC AAGTCCGAGA TCAAGGGCTT CGAACTTGAA GTCCAGGCGA TCCCGTTCGA AGGCCTCACC CTGCGCGGCT CGCTCGCCTA CCTCGACACG AAGTACAAGA GCTTCCTCTA CTTCGATCCG GTCGCGGAAG AGTACCTCAA CCTCAAGGGC TACGCGCTCC AGAACGCGCC GAAGTGGGCT TCGACGCTTG GCCTCAACTA CACCAAGACG ATGGACAACG GGAACTCGAT CGTTGCCGAT GTAAGCTGGA TGTACACCGG GCAGAAGTTC TACACTGCCG TGGTCAACAC CCCGCGCTCG TCGATCCAGC CGACCTACTA CGTCGACGGC ATGCTGACCT GGTACGGCCC GGACAAGCGC TACTCGATCG GCCTGTGGGG CAAGAACCTG TTCGACAAGC GCTATATCTC CACCGTCTAC GACAGCCCCG GCTACATGGG CCTCGTCGGC TACGCACCGC CGCGCCAGTT CGGCGTTTCG GTCGGCTACA ACTTCTGA
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Protein sequence | MKVSRAIQLM SGLSAIALAA VPAGAMAQAA PDQAQAADAP TGGIGEIIVT AQKKAESIQT VPISIAAVGG EQLSAMNVTT LQALQGSVPN VQIDNFANTP NNAVFTIRGI GVIEPDPYAG NTVSIVVDGV PQFFSMGALL DTYDTNRVEI LRGPQGTLFG ANTTGGVVNV VTNQPDGKFD GYVKGTYGNW NRFDISAAVE APLVEDTLSL KVSGIHTQRD GWTTNVWNGE DMGRKNVDAV RGQLYITPNA DLRITLQGEY VAARNGAPIV VNGGLPGEGN YVPEGTFWNG AKLPMYQSPC SVEGQPCKAP DKYYSGNNEV PDQSDMTTKF FVGTIQYDNT PLGDITAITG YKRFTLFEYT DQDGTAKTNN ATRRRTRGWQ FSQELRSAFE AGDNFNAVAG LFYLKTHYNH YQMYHLDFAL PGLVQYNEQD QGTESFSAFL QTYTQLTDQL KLSAGVRYTH DSVNARSTLD YGVGAPALTD PNWAIIPTIV VDGETLQVGR DLRTGPHDID VGGKKSWDNV GWKLGLDYEI GQNQMVYASW ARGFKSGGFT GRIGTASDGD TPYGPEKVDT FEVGLKADFL DRHVRTNLAV FYTNYRDMQV AQIYFDPDTN TQGNRILNAA KSEIKGFELE VQAIPFEGLT LRGSLAYLDT KYKSFLYFDP VAEEYLNLKG YALQNAPKWA STLGLNYTKT MDNGNSIVAD VSWMYTGQKF YTAVVNTPRS SIQPTYYVDG MLTWYGPDKR YSIGLWGKNL FDKRYISTVY DSPGYMGLVG YAPPRQFGVS VGYNF
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