Gene Saro_4011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_4011 
Symbol 
ID5077541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_009426 
Strand- 
Start bp178826 
End bp179449 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content63% 
IMG OID640481116 
ProductTraE family protein 
Protein accessionYP_001165778 
Protein GI146275617 
COG category 
COG ID 
TIGRFAM ID[TIGR02761] type IV conjugative transfer system protein TraE 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.57449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACCTCT CGATTTCTCA CGGCCAGGCG CAGCGGCTCT TAAAGCAGCG CAACCTCCTC 
GCGATCACCG CGACCGGGCT GTTTGCCCTG AGCGTGGTGT TGACGTTCAC CGCCGCGCAC 
CGCGACCGCG AAGTGGTGCT GCAGCCGGTG CTGGCGAAGC CGCTGACGCT GTCCTCGAGC 
CACATCGACA AGGATTACCT TGAGCTCGTC ACGCGCGATG CCGCGCTGCT GACACTCAAC 
CGCTCGCCGT CCAACCTGCA GTACTGGATG GATTCGATCC TGGCGATCAC CGATCCCAGA 
ACCCACGGCC GGATGAAGGC CGAACTGATG AAGATCTTCA ACGAGCAGAA CGGCTCGAAT 
GTCTCGCAGT TCTTCACGAT CGAGAACCTC TCTGTCGATC CCGAGGCACT GACCAGCGAG 
GTCAACGGCG TGCTGCACAC GGTGGTCGGC TCCAAGGAGG TGACCTCCGA AGCCCGGACC 
TTCCGCTACG TGTGGAGCTA CTCGGGCGTC AGCCTCAAGC TCGCCGGGTT CGGGCGCGTG 
ACCAAGGATC CGTCGGGCAA GGTCATCGAC GCCAAGGGCG CGGGCAGCGC GCAATCAGAC 
AATAGCGACG GGGGAGAGGC GTGA
 
Protein sequence
MDLSISHGQA QRLLKQRNLL AITATGLFAL SVVLTFTAAH RDREVVLQPV LAKPLTLSSS 
HIDKDYLELV TRDAALLTLN RSPSNLQYWM DSILAITDPR THGRMKAELM KIFNEQNGSN 
VSQFFTIENL SVDPEALTSE VNGVLHTVVG SKEVTSEART FRYVWSYSGV SLKLAGFGRV 
TKDPSGKVID AKGAGSAQSD NSDGGEA