| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_4006 |
|---|
| Symbol | |
|---|
| ID | 5077536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009426 |
|---|
| Strand | - |
|---|
| Start bp | 171988 |
|---|
| End bp | 174594 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640481111 |
|---|
| Product | type IV secretion/conjugal transfer ATPase |
|---|
| Protein accession | YP_001165773 |
|---|
| Protein GI | 146275612 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family
[TIGR02746] type-IV secretion system protein TraC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.840318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCGC ACGGGTTCTG GGACCGGTTC CTCGATATGC TGTTCGGCGA AAGCGCGCAT
CCGGAGGCGG AGCGCCCGGT GCTCGGCGCG CCGATGCTGT CGAACTGGCT GCCCTATCGA
AGCTACGACA AGAAGCACGG CCTGTTCATC AACACGGACT CGCTCGGGTT CATTCTCGAG
CTGGCCCCGA TGATGGGCGC AGACGAGCGC AGCGGCGAGC TGCTGACCCA GTTTCTGTCG
GACGCCGTGC CCTCGGGCTG CGAGATCCAG CTGATCCACT GGCAGAGTCC CTCGGTTGGC
GAACGCATCG CTGATTGGGT GATGCCGCGC GTGGTCGCCA AGGGGGTCTA TGGCCGCGCG
GCGATGCACC GGGCGCGCTG GCTGCGCCGC GCCGCCTGGA TGTCGATCTC GCGCGACGCA
CCGTTTTACC TGCGCAACAC CCGGGTGATC CTCTCGGTCG GTGCCCGGCT CAGTGGCCCG
ATCGGGGCCG ACACGCTCGC CTCGGTGCGC GACAGTCTTC ACGGGACGCT GCAGTCGCTC
TCGATCCCGG CCCGCGACAT GGGACCGGTC GAACTGATCG CCTTCCTCGA CGATTTTCTC
TGCCCGGCGG TCGATAACGC CGACAAGCCC GAACACTATT CCGAGCTCGA TCCGATCAAC
GTCCAGTGCG TGCGGCGCGA TCTCGAAACC CAGGTCACCC CTGACCGGAT CGTGCTCCAG
ACCGAGCGCT TCCGCCCCAC TGGCGAGCGC CAGGACGGCG CGCCGGTGAT CGGCGAGGTC
GTGCCCGACA AGTTCGACTG GCGCTTCTTC TCGGTGCGCA ACCTCCCCAA ACAATGGGCG
CCGTGGGACG TCCAGAAAAT CATCGGCGAC GTCATCAACG ACAAGCTGCG CTTCGGCTGC
AACGTCATGA CCGTGCTCGG GCTCGTCTAC CAGGACGAGG AAGCGGTCGC CTCGCGCGCG
GGCCTCAAGG TCATGCGCAC CACCAGCCTT GCCGACAGCC GCTCGGCGCG CTTCCTGCCC
CAGCTCTCCG AGCAGCGCGA CGAATGGCAA TACGTTCAGG CCGAGATCCG CCAGGGCCGC
AAGCTCGCGC AGGTCTACTA CGGCGTCGGC GCGCTCTCGC CCTTGGGCAA GGGCGACATC
AACGAGCGCA TGGTGAAGTC GGTCTACAAG GCCTGCGGGT GGGACCTCAT CGACGAGCGC
TACCTCCAGG TGATGGGGCT GCTCGCAGCG ATGCCGCTGT CGCTCCCCAA TGGGCTCTCG
GCTGACCTGA AGCGCATGAA GCGCTTCAAG ACCATGCTCA CCACCACCGC GGCCTCGATC
GCGCCGCTCC AGGGCGAGCA CACCGGCGGG CACATCCCGC ACGTTCTGCT CATCGGCCGG
CGCGGGCAGC CGTTCTTCTG GTCGCCGTTC CAGAACGCGG CGGGCAATCA CAACGTCGCC
GTTTTCGGCA AGTCGGGCTC GGGCAAGTCG GTATTCCTGC AGGACGTCTG TGCCGCGATG
TCCGGCGCGG GGGCCAAGGT CATCGTGATC GATGACGGCC GCTCGTTCGA GCACATGGTC
AAAGCCTTCG GCGGCGCTTT CGTCGAGTTC AAGCTATCCT CTGGCTTCTC GCTCAATCCC
TTCGACATGA TCGACGGCGA GGCGCTAGCG AGCGACGAGG ACGGCGAGGA CTATGAGGTC
GAATGCCTCG CGATGCTCAA ATCGATCGTC GGCCAGATGG CGCGCCAGCA GGACCGCTTG
TCCGACACCG AGCGCGGGCT GATCGATTCC GCGGTGAGCA CGGTCTGGCG CGAGAAACAG
CGCCATGGGA CGATTGACGA TGTTGCCGCG GCGCTGCGCG CGCTGCCTTC GCCCTATGCC
GGCGATCTTG CCGATGCGAT GTCGCCGTTC CTAAAAGGCG GCACCTATGG CCGCTTTTTC
GAAGGCGCCT GCTCGATCGA CCTCTCGGCC GGGCTCACCG TGTTCGAGCT CTCCGACCTC
TCCTCGAAGC CCGAACTGCG CTCGGTCGCG CTGACCGCGC TCATGTTCCT GACACTTCGG
GTGATGCGCG ATCTCGACCG CTCGGTGCCC AAGCTGACGA TGATCGACGA AGCCTGGCAA
CTCCTTGGCG GCGGGCAGAT GGGCCAGGCG ATCGAGACCT ATGCCCGCAC CTGCCGCAAA
TATGGCGGCT CGCTGATCAC AGCGACCCAG TCGCTCAACG ACTTCTACAA GTCGGAAGGT
TCGCTCGCCG CACTCGAAAA CTCGGACTGG TCGATCGTCC TCCAGCAGAA GGAAGAGACG
ATCAACGATC TCGCCAAGCA CCAGCGCTTC GAGATGGACC ATTACACGGA AAGCCTGCTC
CGCTCGCTGA AGCGCAACGG GACCGAGTAT TCCGACGTCC TGATCAAAGG CCCCGAGACG
CTTGCTGTAG GGCGCCTTGT GCTCGATCCC TATTCGGCGA CGCTCTATTC CTCGAGCCCC
CGGGTCTTTT CCGAGATCGA GGACAAGGTG CGCGGCGGCC TGGCGCTCCC CGATGCGATC
GAGCGGGTGG CCTTCCCCGA TTTCGTGCCG CCCGAGCCCG GCGCGCCCGA CTTTGCCGAG
GGCGAGCTTG CGGAGGCGGC CGAATGA
|
|---|
| Protein sequence | MASHGFWDRF LDMLFGESAH PEAERPVLGA PMLSNWLPYR SYDKKHGLFI NTDSLGFILE
LAPMMGADER SGELLTQFLS DAVPSGCEIQ LIHWQSPSVG ERIADWVMPR VVAKGVYGRA
AMHRARWLRR AAWMSISRDA PFYLRNTRVI LSVGARLSGP IGADTLASVR DSLHGTLQSL
SIPARDMGPV ELIAFLDDFL CPAVDNADKP EHYSELDPIN VQCVRRDLET QVTPDRIVLQ
TERFRPTGER QDGAPVIGEV VPDKFDWRFF SVRNLPKQWA PWDVQKIIGD VINDKLRFGC
NVMTVLGLVY QDEEAVASRA GLKVMRTTSL ADSRSARFLP QLSEQRDEWQ YVQAEIRQGR
KLAQVYYGVG ALSPLGKGDI NERMVKSVYK ACGWDLIDER YLQVMGLLAA MPLSLPNGLS
ADLKRMKRFK TMLTTTAASI APLQGEHTGG HIPHVLLIGR RGQPFFWSPF QNAAGNHNVA
VFGKSGSGKS VFLQDVCAAM SGAGAKVIVI DDGRSFEHMV KAFGGAFVEF KLSSGFSLNP
FDMIDGEALA SDEDGEDYEV ECLAMLKSIV GQMARQQDRL SDTERGLIDS AVSTVWREKQ
RHGTIDDVAA ALRALPSPYA GDLADAMSPF LKGGTYGRFF EGACSIDLSA GLTVFELSDL
SSKPELRSVA LTALMFLTLR VMRDLDRSVP KLTMIDEAWQ LLGGGQMGQA IETYARTCRK
YGGSLITATQ SLNDFYKSEG SLAALENSDW SIVLQQKEET INDLAKHQRF EMDHYTESLL
RSLKRNGTEY SDVLIKGPET LAVGRLVLDP YSATLYSSSP RVFSEIEDKV RGGLALPDAI
ERVAFPDFVP PEPGAPDFAE GELAEAAE
|
|---|
| |