Gene Saro_3960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3960 
Symbol 
ID5077444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_009426 
Strand+ 
Start bp132018 
End bp132707 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content65% 
IMG OID640481066 
Productpentapeptide repeat-containing protein 
Protein accessionYP_001165728 
Protein GI146275567 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGACT TGTTTTCTCC TCGCGGCCTT TCGGGGCTGA CGCTGACGCG TTCCGATCTC 
GCACCGCTCA CTGGCGGCGC GCCGCAGGTC GTGACTGATT GCGACCTCGA GGAGGCCGAC 
CTCTCCGGGC TCGACCTCAC GGGCTGGCGC TTCGAACGCT GCAATCTGCG CAAGGCCGAT 
TGCAGCGCTG CCAAGCTTGA AGGCTCGATT TGGCAAGGCT GCCGGGCACC CTTTGTGAGT 
TTCGTCGGTG CCAATCTCAG CGAGGCTGCG TTCGCTGGCG GGGACTTCAA CAATTCCGTC 
TGGCGGCGCG CGACGCTGAC CTCGGCGAAG TTCGTCGGGA CCAAGCTCAC CGGTGCGGAT 
TTCTCCGAAG CGCGGGCCAT GCATATCCAC TTCGAGGAAG TGCTGCTGGT CAGCGCCAAG 
CTGCCCGGCT TCTCGTTCCG TAAGGAGACC CTGCGCCGGG TCGACCTCTC CGGTGCGGAC 
CTGCGCAAGG GCGACTTCCG CATGACGGTG TTCGAGGAAT GCAGCCTGCG CGAAGCGATG 
GTCGCGGGAT CGCGCTTCGA AGGCTCGGAC CTGCGCGGTG CCAATCTTGG CGGGCTGCGC 
CTGGTCGATG CCAACCTGTT TCGCGGGGCG ACGATCTCGC GCGAGCAGGC CGGGCAACTG 
CTTGGCGAAC TCGGTTTGTC GGTCCGCTAA
 
Protein sequence
MDDLFSPRGL SGLTLTRSDL APLTGGAPQV VTDCDLEEAD LSGLDLTGWR FERCNLRKAD 
CSAAKLEGSI WQGCRAPFVS FVGANLSEAA FAGGDFNNSV WRRATLTSAK FVGTKLTGAD 
FSEARAMHIH FEEVLLVSAK LPGFSFRKET LRRVDLSGAD LRKGDFRMTV FEECSLREAM 
VAGSRFEGSD LRGANLGGLR LVDANLFRGA TISREQAGQL LGELGLSVR