| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4316 |
|---|
| Symbol | |
|---|
| ID | 5060801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4889494 |
|---|
| End bp | 4890672 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640476578 |
|---|
| Product | peptidase S1 and S6, chymotrypsin/Hap |
|---|
| Protein accession | YP_001161122 |
|---|
| Protein GI | 145596825 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.156676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGCCG TGGATTTCGT ACTGCTCCTG CTCATGCTCG TGTTCGCGAT CAGCGGATAC
CGCCAGGGCT TCGTCACCGG CGTGCTGTCG TTCTCGGGGT TCTTCCTCGG GGCGCTGGCC
GGCCTACAGA TCGGCCCCCT GCTCGCGCAG CAGTTCCTCG CCACCGGCAC CCGGGTGCTG
GTCTCCCTGG TGGCGATCTT CGGGCTGGCG GTGGTGGGGC AGGCACTCGC CGGCTGGCTC
GGTACGCACC TGCGACGCAC GATCAGCAGT GACCTTGGGC GGCAGCTGGA CGACATCGGC
GGCGCCTTTG TCTCGCTGTT CGCCGTGCTC CTGGTCGCCT GGCTGGTCGC GGTCCCGCTG
GGTTCGTCAT CGTTGCCCTG GCTGGCGTCC GCGGTTCGCA ACAGCGCCCT GCTCACCGTG
GTGGACCGGG TCTTGCCCGA CCAGGCGCAG GAGCTCTCCG CCGCGCTGCG GGAGACCGTC
GACACCAACG GCTTCCCGGA CGTCTTCGGT GACCTGGCGC CCACCCGCGC CCGGCAGGTC
GCCCCGCCCG ACCCGGCCCT CGCCGGATCG CAGGTGGTGG CCAACAGCAA GAGCTCCGTG
GTCAAGGTGC TCGGCTCCGC CCCAAGCTGC TCCCGCCGTC TGGAGGGCTC CGGCTTCGTC
TACGCCGACG ACCGGGTGAT GACCAACGCG CACGTGGTGG CCGGGACCCG CTCCACCGTC
GTCGAGCTCA ACGGCGAACG GTACGAGGCT CGGGTGGTGG TGTATGACCC GGACCGGGAT
CTGGCAGTCC TGCACGTCCC GGGCCTGCCC GGCCCGTCGA TGCGGTTCGC CGCCGGCAAC
GAGCGCAGCG GTGCGGACGC GATCGTGCTC GGCTTCCCGC TCGACGGCCC GTACAACGCC
CAGTCGGCCC GGGTCCGAGA GGTCGACCAG ATCACCGGCC CGGACATCTA CTCCAGCGGG
AACGTGAGCC GGGAGGTCTA CACCATCCGG GCTCTGGTGC AGAGCGGAAA CTCCGGCGGC
CCGTTGGTCT CCACGAATGG CCTGGTGCTC GGGGTGATCT TCGCGGCGGC GGCCGACGAC
CCGAACACCG GTTTCGCGGT CACCGCGGCC GAGGCCCGCT CGGTCGCCCT GGCCGGCGCC
GAACGCGTGC GCGGGGTCAG CACCGGCGAG TGCACCTGA
|
|---|
| Protein sequence | MSAVDFVLLL LMLVFAISGY RQGFVTGVLS FSGFFLGALA GLQIGPLLAQ QFLATGTRVL
VSLVAIFGLA VVGQALAGWL GTHLRRTISS DLGRQLDDIG GAFVSLFAVL LVAWLVAVPL
GSSSLPWLAS AVRNSALLTV VDRVLPDQAQ ELSAALRETV DTNGFPDVFG DLAPTRARQV
APPDPALAGS QVVANSKSSV VKVLGSAPSC SRRLEGSGFV YADDRVMTNA HVVAGTRSTV
VELNGERYEA RVVVYDPDRD LAVLHVPGLP GPSMRFAAGN ERSGADAIVL GFPLDGPYNA
QSARVREVDQ ITGPDIYSSG NVSREVYTIR ALVQSGNSGG PLVSTNGLVL GVIFAAAADD
PNTGFAVTAA EARSVALAGA ERVRGVSTGE CT
|
|---|
| |