Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4236 |
Symbol | |
ID | 5060721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 4801252 |
End bp | 4802064 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640476498 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001161042 |
Protein GI | 145596745 |
COG category | [K] Transcription |
COG ID | [COG1813] Predicted transcription factor, homolog of eukaryotic MBF1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.359637 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGACTG GGGAGATGAC CGCTGCGGCG TTCTTGGTGG CGGAGTTGCG CCGGGCTCGG GTTCGGCGGG GTTGGAGTCA GGAGGAGCTG GCCAAGGCGA TCAACTATTC GCCGTCGATG GTCAGTGCGG TGGAGTTGGG GCAGCAGCCG CCGACCAGCA AGTATCTCGA ACAGTTCGAC AGGGCTCTCG ACACCGGCGG CCTCTTTACC CGCATGCTTA CTGATCTGGT GGCACTTGAT AGAGCACAGG CATGGTCGCG CGGCTGGCGC AGAATCCAGG CGGAGTCGTG GGCCCTACGC TGGTTCGACC CGCTACACGT TCCAGGTCTG TTGCAGACCG AGGCGTACGC GCGGGCGGTC TTCGAGTCAG ATCCACTACT TGATCCAGAA GAAGTCCAGC GGCGACTTGC CGACCGGCTG GACGGTCAAT CGGTGCTATA CGCCGAGCGT CCATCCCGGC TCGTGGGGGT AATGGATGAG GCGGTGCTAC GGCGGAGGGT GGGCGGGCGA AAGGTCATGT GCGACCAGTT GTCGCACCTC GCCCGTCTAG CCGTCGAGCA CCCCCACGTT CGAGTCCAGG TCGTGCCATC CTCGGCGGAG GAGTACCCGG GCCTTAACGG CCCGTTCATT CTCGCCAGCA TGACCGGTGG CAGCGAGCTT GCCTTTCTCG GCGGCCAGAT CGGCGGGCAG GAGCTGGATC GGTCGGCTGA TCTCATGCGC TTGCAACGGA CCTGGGAGGC TACCCTCGCC GTGGCCCTGC CCCCGCAGGA GTCCATCGAG CGGATAAGGG AACTGGTGGA GTCATGGAAA TGA
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Protein sequence | MATGEMTAAA FLVAELRRAR VRRGWSQEEL AKAINYSPSM VSAVELGQQP PTSKYLEQFD RALDTGGLFT RMLTDLVALD RAQAWSRGWR RIQAESWALR WFDPLHVPGL LQTEAYARAV FESDPLLDPE EVQRRLADRL DGQSVLYAER PSRLVGVMDE AVLRRRVGGR KVMCDQLSHL ARLAVEHPHV RVQVVPSSAE EYPGLNGPFI LASMTGGSEL AFLGGQIGGQ ELDRSADLMR LQRTWEATLA VALPPQESIE RIRELVESWK
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