Gene Strop_4236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4236 
Symbol 
ID5060721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4801252 
End bp4802064 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content64% 
IMG OID640476498 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001161042 
Protein GI145596745 
COG category[K] Transcription 
COG ID[COG1813] Predicted transcription factor, homolog of eukaryotic MBF1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.359637 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACTG GGGAGATGAC CGCTGCGGCG TTCTTGGTGG CGGAGTTGCG CCGGGCTCGG 
GTTCGGCGGG GTTGGAGTCA GGAGGAGCTG GCCAAGGCGA TCAACTATTC GCCGTCGATG
GTCAGTGCGG TGGAGTTGGG GCAGCAGCCG CCGACCAGCA AGTATCTCGA ACAGTTCGAC
AGGGCTCTCG ACACCGGCGG CCTCTTTACC CGCATGCTTA CTGATCTGGT GGCACTTGAT
AGAGCACAGG CATGGTCGCG CGGCTGGCGC AGAATCCAGG CGGAGTCGTG GGCCCTACGC
TGGTTCGACC CGCTACACGT TCCAGGTCTG TTGCAGACCG AGGCGTACGC GCGGGCGGTC
TTCGAGTCAG ATCCACTACT TGATCCAGAA GAAGTCCAGC GGCGACTTGC CGACCGGCTG
GACGGTCAAT CGGTGCTATA CGCCGAGCGT CCATCCCGGC TCGTGGGGGT AATGGATGAG
GCGGTGCTAC GGCGGAGGGT GGGCGGGCGA AAGGTCATGT GCGACCAGTT GTCGCACCTC
GCCCGTCTAG CCGTCGAGCA CCCCCACGTT CGAGTCCAGG TCGTGCCATC CTCGGCGGAG
GAGTACCCGG GCCTTAACGG CCCGTTCATT CTCGCCAGCA TGACCGGTGG CAGCGAGCTT
GCCTTTCTCG GCGGCCAGAT CGGCGGGCAG GAGCTGGATC GGTCGGCTGA TCTCATGCGC
TTGCAACGGA CCTGGGAGGC TACCCTCGCC GTGGCCCTGC CCCCGCAGGA GTCCATCGAG
CGGATAAGGG AACTGGTGGA GTCATGGAAA TGA
 
Protein sequence
MATGEMTAAA FLVAELRRAR VRRGWSQEEL AKAINYSPSM VSAVELGQQP PTSKYLEQFD 
RALDTGGLFT RMLTDLVALD RAQAWSRGWR RIQAESWALR WFDPLHVPGL LQTEAYARAV
FESDPLLDPE EVQRRLADRL DGQSVLYAER PSRLVGVMDE AVLRRRVGGR KVMCDQLSHL
ARLAVEHPHV RVQVVPSSAE EYPGLNGPFI LASMTGGSEL AFLGGQIGGQ ELDRSADLMR
LQRTWEATLA VALPPQESIE RIRELVESWK