| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3785 |
|---|
| Symbol | |
|---|
| ID | 5060263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4337187 |
|---|
| End bp | 4339004 |
|---|
| Gene Length | 1818 bp |
|---|
| Protein Length | 605 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640476043 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001160594 |
|---|
| Protein GI | 145596297 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGCGG AGGTTGACGG CGATCCGGCC CCCACCACAG GCCGACATCC GCTCGACAGC
CTCTGGCGGC TGCGGCACTA CCTGCGGCCG TACGCGCACG AGTTCGCCTG GCTCTTCCTC
GCCGGCCTGG CCGCCATGGC AGCGGGGATC GCCGTGCCGC TGGTGGCCCA GCGGGTGGTG
GACGGCCCGG TCGCCCGGCA GGATCCGGCC GGGCTGTTCC GCCTCGCCGG CCTGGCGCTG
CTGTTCGGGC TCGCCGAAGC AGTGCTGATC TTCATCCGCC GCTGGGTGCA GTCCTCCTCC
TCGGTGGGGA TCGAGACGGC CATCCGCGCC GACATCTACG CCCACCTGCA ACAGCTCCCG
GCCAGCTTCC ACGACCGGTG GCAGTCGGGC CAGCTCCTCT CCCGGATCAC CACCGACCTG
TCGGCGATCC GTCGGTTCCT CTCCTTCGGC CTGCTCTTCT TCGTCCTGAA CCTGGTCACC
TACGCCGTGG TGGTGGCGCT GCTGATCCGG CTGCACCCCG TGCTGGGCCT GGTCGTGGCG
GTCAGCGCCA TCCCTCTGTT CCTCCTCGCG CGGCGGTTCG CCCGCGCCTA CCACGCCGCC
TCCCGGCGGA TGCAGGACCA GCAGGGCGAC CTGGCCACGC TGGTCGAGGA GACCGCGCAG
GGGCTGCGCA CGGCGAAGGC GTACGGGCGC GGGCCGGAGC TGGCCGCCCG ATTCGCCGTC
AGCGCCCGAG CGCTACACGA CACCGCGGTC GGCAAGGGAC GGCTGCTCGC CGACACCTCC
GCCCGCCTTG ACCTGGTGCC GAACCTGACC CTGGGCGTCG TCCTCATCGC CGGCGCGGGC
GCCGCCGCGG CCGGCACGCT CACCATCGGC GAGCTGGTGG CCTTCGTCAG CCTCCAGCTC
CTGCTGATCT GGCCCGTGCA GGGCCTGGGG TGGATCATCG CGGGCGGGCA GGAGGCGGCC
ACCGCGGCCG ACCGAATCTG GGAGGTGCTG GACACCCCGC CCGCAATCCT GGACGCTCCC
GACGCCGCCG ACCCACCCCG CTCCCAGATC CTTGGTCGGT TGCGGTTCGA GGGAGTCTCG
TTCAAGTACC CGGGTGCCCG CGAACCGGTG CTGCGCGGCG TCGACCTCAC CATCGAGCCG
GGCGAGACGG TGGCGCTGGT CGGGGCGACC GGCTCCGGCA AGAGCAGTCT GCTGTCGCTG
GTGCCCCGGC TGCACGACGT GACCGGCGGC CGCGTCACCA TCGACGGGTA CGACGTGCGG
GGCCTGCGGC TGGCGACGCT GCGCCGGCTG GTCGGGGTGG CCTTCGAGGA GCCGACGCTC
TTCTCCATGT CGGTGTGGGA GAACGTGACC CTGGGCCGAC CCGACGCCGG TGACGAGGAG
GTCCGGGCCG CGCTCACGCT GGCACAGGCC ACCTTCGCCT ACGACCTCCC GTGGGGGTTG
GCCACTCGCG TCGGCGAGCA GGGCCTGTCG CTCTCCGGCG GCCAGCGGCA ACGGCTCGCG
CTCGCCCGGA CGGTGCTCAG CCGTCCAGCC CTACTCCTGC TCGACGACCC CCTGTCCGCC
CTCGACGTGC ACACCGAGGC GCTGGTCGAG ACGGCGCTAC GCCGGGCCCT ACCCGACACG
ACAACGCTGG TCGTGGTACA CCGACCGGCC ACGATCGCGC TCGCCGACCG GGTCGCCCTG
CTGGAGGCCG GCCGGATCAC CGCGCTGGGC CGGCACTCCG ACCTGCTCGC CACCGTGCCC
GCGTACCGTG CCCTGCTCTC GGCCGAGCCA GGGCCGCCGG CGGACGATCC GACCCCCAAC
GGCCTGGTGC GCTCGTGA
|
|---|
| Protein sequence | MPAEVDGDPA PTTGRHPLDS LWRLRHYLRP YAHEFAWLFL AGLAAMAAGI AVPLVAQRVV
DGPVARQDPA GLFRLAGLAL LFGLAEAVLI FIRRWVQSSS SVGIETAIRA DIYAHLQQLP
ASFHDRWQSG QLLSRITTDL SAIRRFLSFG LLFFVLNLVT YAVVVALLIR LHPVLGLVVA
VSAIPLFLLA RRFARAYHAA SRRMQDQQGD LATLVEETAQ GLRTAKAYGR GPELAARFAV
SARALHDTAV GKGRLLADTS ARLDLVPNLT LGVVLIAGAG AAAAGTLTIG ELVAFVSLQL
LLIWPVQGLG WIIAGGQEAA TAADRIWEVL DTPPAILDAP DAADPPRSQI LGRLRFEGVS
FKYPGAREPV LRGVDLTIEP GETVALVGAT GSGKSSLLSL VPRLHDVTGG RVTIDGYDVR
GLRLATLRRL VGVAFEEPTL FSMSVWENVT LGRPDAGDEE VRAALTLAQA TFAYDLPWGL
ATRVGEQGLS LSGGQRQRLA LARTVLSRPA LLLLDDPLSA LDVHTEALVE TALRRALPDT
TTLVVVHRPA TIALADRVAL LEAGRITALG RHSDLLATVP AYRALLSAEP GPPADDPTPN
GLVRS
|
|---|
| |