| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3662 |
|---|
| Symbol | |
|---|
| ID | 5060138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4200363 |
|---|
| End bp | 4201499 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640475918 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001160471 |
|---|
| Protein GI | 145596174 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.57412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGTGGG ATCGAGCCAA AATCGCACCG CACGGGGACA CTCCGGGAAG AATCAGGTCA
AGAAACCTGG CGGCCAGGGG GTGGCGGACG GAAGGGCGGG AACGTCAGAA CTCGCCGGAT
TCCATTTCCC GCGGCCTCTT TGCGGGTGAG GTCGCCGTAC CGCGCATGCT GAAGCTATTC
CGAAGGTACG GCCTACGGAG CACCTGGTTC GTACCCGGGC ATTCCATCGA GACCTTCCCC
GACCAGTGCC GACAGATCGT GGACGCCGGC CACGAGATGA GCATCCACGG CTACAGTCAC
GAGAACCCGC TGGCGATGAG CCGTACGCAG GAGGCTGCGG TCCTGGACCG AAGCATCGAG
TTGGTCGAGG CCGTGAGTAA GCGGCAGCCC ACGGGATACG CCGCACCATG GGGATCACTC
TCACCGGTCA CGCATGAGCT GTTGCTGGAA CGAGGAATCA AGTACGACCG CACGTTCATG
CACAACGACT TCCATCCCTA CCGACTTCGC GCCGGGGACA CCTGGACCAA GATCGACTAT
TCCGCCCGAG CCAGCGAGTG GATGAAGCCG CTGGTCCGCG GCGAGGAGAC CGATCTCATC
GAGATCCCAC CAAACTGGTA TCTCGATGAC CTACCGCCGA TGATGTTCAT CAAGGCCAAC
CCCAACAGTC ATGGCTGGGT CAACCCACGA CAACTGGAAA AGATGTGGCG CGACCAGTTC
GACTGGGTCT ACCGGGAGCT GGACCATGCC GTATTCCCCA TCAATCTCCA CCCCGATTTC
TCGGGACATC CGCAGGTCCT TCTGATGCTC GAACGAATTA TCGACTACAT CAAACAGCAC
AAGAGCATCC GGTGGGTCAC CTTCGATGAG ATTGCCAATG ATTTCGCGGC CCGCAACCCC
GCGGCGGGAG CAGGTGACCG CCCGCGGCGG ACAGAACGTG GTACGGCACC CGGGAGGCTC
AGCCGGCGGC CCGCCGGGCA CGGGCCCGAC GCTTCCCCTC CTGCATCGCC TGCACCCGGG
CCACCGGGAT GGTGCGCCCC TCGGCGACCA GGTCGGCCGG GAGCTGTTGC GCCGTGGGCA
TTCCGTCCGC CCACGGATCC CCGGTGGCGA CCAGGGCGGG CGCGGTCTGA ATCGTGA
|
|---|
| Protein sequence | MGWDRAKIAP HGDTPGRIRS RNLAARGWRT EGRERQNSPD SISRGLFAGE VAVPRMLKLF
RRYGLRSTWF VPGHSIETFP DQCRQIVDAG HEMSIHGYSH ENPLAMSRTQ EAAVLDRSIE
LVEAVSKRQP TGYAAPWGSL SPVTHELLLE RGIKYDRTFM HNDFHPYRLR AGDTWTKIDY
SARASEWMKP LVRGEETDLI EIPPNWYLDD LPPMMFIKAN PNSHGWVNPR QLEKMWRDQF
DWVYRELDHA VFPINLHPDF SGHPQVLLML ERIIDYIKQH KSIRWVTFDE IANDFAARNP
AAGAGDRPRR TERGTAPGRL SRRPAGHGPD ASPPASPAPG PPGWCAPRRP GRPGAVAPWA
FRPPTDPRWR PGRARSES
|
|---|
| |