| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3660 |
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| Symbol | |
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| ID | 5060136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4193635 |
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| End bp | 4199658 |
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| Gene Length | 6024 bp |
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| Protein Length | 2007 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640475916 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001160469 |
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| Protein GI | 145596172 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTCACGC CGGAGCCGGT GGTCTGGCCG ACTGAGGGGT CGGCGGTGGT CGATTTGCCG
CTGTCGAGAG ATCAGTCGCG GCGTGTGCGG GGGGCGGTGA AGCCGGGTGG TTTGCCCGTT
GGGGTGACGG CGGTGGACGA CGATGCGACG GATGTGTTGT CGGGCCAAGC GTTGGCCGAT
GCGGCGGATG CCTCGGAGCT GCCGGCTCGG GTGCGGGTCG AGGTGTTGGA TCGGAAGGCG
GCGCAGCGGG CGGGTGTGCC GCTCGCGTTG CGGGTCGATC GTGTGGATGG TGGCGGGCGG
GGACGCGCTG AGGTGCGGGT GGACTATTCG TCGTTCGCGC ACGCCTATGG GGGTGACTGG
GCGTGGCGGT TGCGGTTGGC GACGATGCCG GCGTGCGTGT TGACCACGCC GGAGGCAGCG
GAGTGTGGGC AGGTTCGGTG GTTGGATTCG GTCAATGACG GTGCCGCGGG CGTGGTCACT
GCTGAGGTGG ACCTGGCTGC TTCCGCGCTG GAGCCGCAGA GCGGTCGGTT GGCGGGGTCC
GACGCGGCCG GGTCGGCTGC GGGGCAGATT GTGGTGTTGG CTGCGGCTGG GTCCTCGACG
GAGGCTGGGG ACTTTTCGAA GACAGATCTG AAGGCGTCGT CGTCGTGGGC AGCTGGCGGT
AACTCCGCGG ATTTCACCTA CTCGTACCCG ATGGAGGTGC CGACGGTGCC GGGTGACCTG
GTACCGGAGG TGAGTCTGGG GTACAGCTCG GGTTCGGTGG ACGGGCAGAC GGCGGGGTCG
AACACTCAGC CGTCGAAGTT TGGGGAGGGG TGGAACTACA CCCCGGGGTT CATCGAGCGT
ACCTACCGTC CGTGCGTGGA CGACTCCGAA AGTGAACTGT CGCCACACTG GACGTCGTTG
GCGTCGACGG GGGACCTGTG TTGGCGGCAG CCCAACGCGC AGATCATGCT CAACGGCACG
TCCAGCGAGA TCGTGCTCGG CAGCGACGGG AAGTGGCGGC TGGCCGACGA CGACGGGTCG
CGGGTGGAGT TGCTTACCGG TGCTCCTAAC AGTGACAACA ACGGTGAGCA CTGGCGGGTG
ACCACGACGG ACGGGACGGA GTACTGGTTC GGTCGGGAGA AGCTGCCCAA TGGTAAGGGA
AACATGAACT CGACCGCGGT GGCGCCGGTT TTTGCGAACC ATTCGCACGA GCCGTGTTTC
AGTAGTTCGT CGGTGGGATC GTCGCGGTGT CAGCAGGCAT GGCGGTGGAT GCTTGACTAT
GTGGTGGACC GTAACGGTAA CGAGATTTCG TACTGGTATG GCCGGGAGAC GGTTCGGACG
GGGTTGAGGA ATTCGGCGTC GTCGACGGCT CAGTATCACC GTGAGGTGTA TCTGAAGCGG
ATCGAGTACG GCACTCACGC AGCTGACGCG TCGAGTGTGG TGGCGCCGGC GCGGGTGGTG
TTCACCAACT CGGACCGGTG TGTGACGACG TCGTGTGGTA CGCGCAACGA GGCGAACTGG
CCCGACACTC CGTGGGATCT GGAGTGCACG GTGTCGGCGT CGAGTTGCTC GAACAATCTG
ACGCCGAGTT TCTGGTCGAG TAAGCGGGTA TCGAAGATCT CGACGCAGGT GTTGACGAGC
GGCTCGTATT CGACGGTGGA TGAGTGGGCG ATCGGACATC AGTTCCCGTC GGCGCCCGGA
TCACCGGTGT TGTGGCTGTC GAGCATCACG CGTACGGGCA AGACGGCGGG TGGCTCGATC
ACGCTGCCTG CGTTGACAAC GTACGGCACG AGGATGCAGA ACCGGGCTGA CTATGACCCG
GACGCGTCGA TGCAGTCGCA TGAGAAGTAT CGGGTCACCA GGCTGCGGAC CGAGTCCGGT
GGCCAGGTTG ATGTCACCTA CGCCGACACG GACACCGGGT GCCGGTTCGG GTCCGCGTTC
CCGGATCCGG ATCACAACTC GAAGCGGTGC TTCCCGCAGT ACTACACCAA CCCGTCGGGG
CAGACGGGCT GGTCGTGGTG GCACAAACGG ATTGTGTCCA AGGTTGTCGA GTCCGACCTA
GTGGGAGGTT CCGCACCGAT CACGACCGAG TACGGGTATT CGACGGCGAA CTCCTCCACC
AGCGTGTTGT GGGCTCACTC GGACGGGGCT GCGGTGTGGG CGGCACCGCT GGCGAAGCGG
TCCTGGGCTG ATTGGGCCGG CTACACCAAC GTCACCGTCA AAAGGGGCTC GGGTTCGGGT
ACCCGGTCGC AGACCGACTA CCTGTACCTG CGGGGCCTGC ACGGCGACTA CATTTCCTCG
GGAACCCGCA CCGCGTCGGT GACACCGTTC GACTCGGTCG TCGGTGGAGG CGCGGCCACG
GACGCCGAGT ACCGGCGGGG GCATCTCCTC AACGAGCGTA CCTATGACCG GGCTGGCGGC
AGCGTGGTGC AGATCGTCAA GCACGACCCG TGGACGGTGA CGACCGGTAC TCGGACGCTG
TCGACGACGT GGGCGGTGCC GAACGTGCAC AAGTCCTACA TCACCCGGGT CGACGACGAG
ATCCGGTGGG AATGGGTCGA CGGGGCCTGG TCACGGCGGT CGCTGGTGCG CACCAGCTAC
GACTCCACGC TGGGCCGGGT GGTATCGGTG TCGGACGAGG GCGGACCCGC GACCGACGAC
CAGACCTGCG TCACGTACAC GTACGCGGAC AACCCGTCAA CGCACAAGTA CGACTTCGTC
AAGCAGGAAA CCCTGCGGGC CGCGGGTTGC AGTGAGACGC TAGGCGAGCT GCTCGGCGAC
ACCCGCTACT ACTACGACGG GCTCGCCCAC GGCGGCGCAC CGGGACGGGG CAACGTCACC
AAGACTGGCC ACTACGTCGA TGACGCTTGG GTCATCGCCT CGCAGAACGT GGTCTACGAC
TCCCACGGTC AGGTCACCTC GTCCACCGAC GTAGCGAACC GGACCACCAC CACGGTCTAC
ACGGAGAACT CCGACCGGCT GACCACCACG GTCACGGTCA CGAACCCGGC CGGTCACACG
AGCACCAGCA GCTTCGACGT CACGCGTGCC GTCCCATTGA CAGTCACCGA TGCCAACAAC
AAGGTGACAA CCGGCACCTA CGACGCGGTG GGTCGGCTGC TGTCGGTAAC CCGGCCCGGC
AACACCACCG GTACTCCCGA TGTCGAATAC GCCTACACCC TGTCGAAAAC CGCACCATCC
TGGGTGCGCA CGCGGGCGTT GGGCCCGAAC GGCAACCAGA TCACCTCGTA CGAGATCTAC
GACGGGCTGC TGCAACACCG CCAAACCCAG GCCACCGCCG CTGACGGCAA GCGGGTCATC
ACCGAGAACG TTTACGACGA GCGCGGGCTG ACAGCTAAGG AATCCACCTT CTGGAACACC
GACTCCACGC CGACGTCTAC CCTCGTCACC GCCGCTGACT CCGCCATCGA GCGACAGACC
CGCTACACCT ACGACGGGCG AGACCGGCAA ACCGCCGCGG AAACCTGGTC ACGGGACACG
TACAGGTGGA AGACGACCAC CGCGTACACG TGGAATTCCA CCACCGTCAC CCCACCCGCC
GGGTCCTACC CCACCCGCGA CATCGTCGAC GACCACGGCC GGGTCGCCGA GAAGCGGCAG
TACCACACGG CAAACACGGC GGGAGCGTTC GACCAGACCA CCTACGGGTA CAACCTGCGC
GGTGACCTGA CCTCGATCGT CGACCCGGCC GGGAACACCT GGTCCTACAC CTACGATCTG
CGCGGCCGAC GAACCCAGGC TGTCGACCCT GACGCCGGCA CCACCAGCAC CGACTACCAC
GACACCGGCA CGGTGAAGAC CGTCACCGAC GGGCGCGGCA GCACCCTGTA CTACAGCTAC
GACGACCTCG ACCGGCGCAC CGGTGTCCGC GACGGATCCG CCACCGGCCG GCTGATGGCC
GCTTGGACCT ACGACACCCT CGCCAAGGGC CAGCCGACCA GTTCCACCCG CTACGACACC
GACGCACTGG CCTACACCAG CAGCGTCGAC TCCTACGACG ACGGCTACCG GCCCCTGTCC
TCTACAGTCA TCATCCCCGC GTCCACTGCC AACAGCACGC TCGCCGGCGC CTACACCACC
ACAACGACCT ACAAGCCCAA CGGAGCCGTC GCCACCCAAA GCCTGCCCGG TGTCGGCGGG
CTGCCCGCCG AAACGCTGAC CCACACCTAC ACCAGCCAGG GCCTACTCAC CTCCATGGCC
TCCGGCGAAC AGACCTACCT CGCCGACATC GACTACGCCT ACGACACCCT GCCCTACCGC
ACCTACCTCG GCGACAACGA CAATCGAGTG CGACTGACCA CGCAACACGG CACCAGCGTC
CGCCGGCTCC TCGACGCCCG GGTGCAGACC GAGAACCCCA CCACCCCGGG CACCTGGGAC
GACAAGTTCA GCACCCAGTA CGCCTACCAG GACAATGGCC TGATCAGCGT CATCGCCGGG
AAGACCGACG GCCAACGAGA CCAGGTCGAA TGCTTTACCT ACGACCACCA ACAACGCCTC
ACCGAAGCAT GGACCGAAGC GACCTGGAAC TGCGCCACCC CGCAACGCGC CGGCGCCGAT
CCGTACTGGC GGCAATGGAC CTTCGACACC ATCGGTAACC GACTCACCCA GGTCGACAAG
AACCCCGCCG CCGGGGACAC CACCTGGACC TACACCAGCC CCAACCCCGG CCAGGCCCGA
CCCCACACGG TCACCGACGT CACCGCGACC GGCCCCCAAG CCGCCACCCC CACCCGAGCG
TTCACCTACG ACGACGCCGG CAACACCCTC ACCCGAACCA CGCCCACCGG CGACACCCAA
ACCCTGACCT GGAACCCCGA AGGCCGCCTC GACACCCTCT CTGAAAACGG CGACATCACC
AGTTACCTGT ACGACGCCAA CGGTGCAAGG CTCCTCACCC GCGACCCCGA CAAAACCACC
CTCTATCTCG GCCACACCCA ACTCGAACTT TCCACCGGCA GCACCCAAGC CGACGGCACC
CGCTACTACG ACGGCTACGC CATCCGCGAC ACCACCGGCC TGAAGTGGAC CGTCAACAAC
CACCAGGGCA CCGGCCAAGT CCAGATCGAC GCCGGCACCC TCACCACCCA ACGCCGCCGC
CTCATGCCCT ATGGCGAAAG TCGCGGCACG CCACCGTCTC CCTGGCTTGG CACCCGAGGC
TACGTCGGTG GCACCACCGA CCCCACCGGC CTCACTCACC TCGGTGCCCG AGAATACGAT
CCCACCCTCG GCCGCTTCAT CAGCGTTGAC CCGATCATTG AGTCGACGAA CCTTCAGCAG
ATGCATGGGT ACGCCTACGC TAACAACTCT CCAATTACGT TCAGCGACCC CAGTGGCCTA
TATTACGAAG AGGGTGTCAA TGGAGATGGC CGACGCGCCT ACATCACCAA AAAGAAGATA
AAGATAACCG GCAAGCCCAT AAAGCGGCCG AGTGCTCAGC TTCGACACCG TTTCAACAGT
ACTTATCGGG CGATACGCAA GATTCAGAAA GTTGTAAAAG CTGCTATATA TATCAAGGTG
GATCGGCCCG ATGGAAAGAA AGGGTTCGAT GTTAGTGCCA TTGATGTCGC CAACAATGTG
GGAGCCGGCC TTCAGCATGT AAAGAGTCGG GCTGTGAATC TCCGAGGATT CGGGAATACC
GCCGACTCGC GGCGACGGAA TGCATTCGCT GTACAGACGC GATTCAGGAA GGATGGCAGG
GTTCGCGCGC TCGACCGGGT AACCGGTGCA CGGTACTTCA GTCGGGCTGG TTTTGTCATG
ATGGCTGTCG ACGGTGTCTT CACTTATAGT GATGAGCGCA AGGATGGTGC GTCTGAAGCG
GCTGCAGCTA CTGTGGCAGG TGCTGGTGCG GTTGGAGGAA TGGCCGGCGC TTGGGTAGGC
GCGCAAGCGG GCGCTGCAAT TGGCACTGCC GTCGGCGGGC CGGTGGGCAC TCTCGTGGGC
GGTGCAGTAG GTGCCTTGGC CGGAGGAATT ATAGCAAGCG AGGTCGGCAA GGGGCTCGGG
AGGGAAGTCA GTTCATGGTT CTAG
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| Protein sequence | MFTPEPVVWP TEGSAVVDLP LSRDQSRRVR GAVKPGGLPV GVTAVDDDAT DVLSGQALAD
AADASELPAR VRVEVLDRKA AQRAGVPLAL RVDRVDGGGR GRAEVRVDYS SFAHAYGGDW
AWRLRLATMP ACVLTTPEAA ECGQVRWLDS VNDGAAGVVT AEVDLAASAL EPQSGRLAGS
DAAGSAAGQI VVLAAAGSST EAGDFSKTDL KASSSWAAGG NSADFTYSYP MEVPTVPGDL
VPEVSLGYSS GSVDGQTAGS NTQPSKFGEG WNYTPGFIER TYRPCVDDSE SELSPHWTSL
ASTGDLCWRQ PNAQIMLNGT SSEIVLGSDG KWRLADDDGS RVELLTGAPN SDNNGEHWRV
TTTDGTEYWF GREKLPNGKG NMNSTAVAPV FANHSHEPCF SSSSVGSSRC QQAWRWMLDY
VVDRNGNEIS YWYGRETVRT GLRNSASSTA QYHREVYLKR IEYGTHAADA SSVVAPARVV
FTNSDRCVTT SCGTRNEANW PDTPWDLECT VSASSCSNNL TPSFWSSKRV SKISTQVLTS
GSYSTVDEWA IGHQFPSAPG SPVLWLSSIT RTGKTAGGSI TLPALTTYGT RMQNRADYDP
DASMQSHEKY RVTRLRTESG GQVDVTYADT DTGCRFGSAF PDPDHNSKRC FPQYYTNPSG
QTGWSWWHKR IVSKVVESDL VGGSAPITTE YGYSTANSST SVLWAHSDGA AVWAAPLAKR
SWADWAGYTN VTVKRGSGSG TRSQTDYLYL RGLHGDYISS GTRTASVTPF DSVVGGGAAT
DAEYRRGHLL NERTYDRAGG SVVQIVKHDP WTVTTGTRTL STTWAVPNVH KSYITRVDDE
IRWEWVDGAW SRRSLVRTSY DSTLGRVVSV SDEGGPATDD QTCVTYTYAD NPSTHKYDFV
KQETLRAAGC SETLGELLGD TRYYYDGLAH GGAPGRGNVT KTGHYVDDAW VIASQNVVYD
SHGQVTSSTD VANRTTTTVY TENSDRLTTT VTVTNPAGHT STSSFDVTRA VPLTVTDANN
KVTTGTYDAV GRLLSVTRPG NTTGTPDVEY AYTLSKTAPS WVRTRALGPN GNQITSYEIY
DGLLQHRQTQ ATAADGKRVI TENVYDERGL TAKESTFWNT DSTPTSTLVT AADSAIERQT
RYTYDGRDRQ TAAETWSRDT YRWKTTTAYT WNSTTVTPPA GSYPTRDIVD DHGRVAEKRQ
YHTANTAGAF DQTTYGYNLR GDLTSIVDPA GNTWSYTYDL RGRRTQAVDP DAGTTSTDYH
DTGTVKTVTD GRGSTLYYSY DDLDRRTGVR DGSATGRLMA AWTYDTLAKG QPTSSTRYDT
DALAYTSSVD SYDDGYRPLS STVIIPASTA NSTLAGAYTT TTTYKPNGAV ATQSLPGVGG
LPAETLTHTY TSQGLLTSMA SGEQTYLADI DYAYDTLPYR TYLGDNDNRV RLTTQHGTSV
RRLLDARVQT ENPTTPGTWD DKFSTQYAYQ DNGLISVIAG KTDGQRDQVE CFTYDHQQRL
TEAWTEATWN CATPQRAGAD PYWRQWTFDT IGNRLTQVDK NPAAGDTTWT YTSPNPGQAR
PHTVTDVTAT GPQAATPTRA FTYDDAGNTL TRTTPTGDTQ TLTWNPEGRL DTLSENGDIT
SYLYDANGAR LLTRDPDKTT LYLGHTQLEL STGSTQADGT RYYDGYAIRD TTGLKWTVNN
HQGTGQVQID AGTLTTQRRR LMPYGESRGT PPSPWLGTRG YVGGTTDPTG LTHLGAREYD
PTLGRFISVD PIIESTNLQQ MHGYAYANNS PITFSDPSGL YYEEGVNGDG RRAYITKKKI
KITGKPIKRP SAQLRHRFNS TYRAIRKIQK VVKAAIYIKV DRPDGKKGFD VSAIDVANNV
GAGLQHVKSR AVNLRGFGNT ADSRRRNAFA VQTRFRKDGR VRALDRVTGA RYFSRAGFVM
MAVDGVFTYS DERKDGASEA AAATVAGAGA VGGMAGAWVG AQAGAAIGTA VGGPVGTLVG
GAVGALAGGI IASEVGKGLG REVSSWF
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