| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3254 |
|---|
| Symbol | |
|---|
| ID | 5059719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 3730595 |
|---|
| End bp | 3731455 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640475502 |
|---|
| Product | apurinic endonuclease Apn1 |
|---|
| Protein accession | YP_001160066 |
|---|
| Protein GI | 145595769 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0648] Endonuclease IV |
|---|
| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.238578 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA TGCGGCCGGT CGGCACACAC ACACCGACCG GGGGCGGGCT GGCGAAGGCC
GCCCTGCCGT ACCTGGATGC AACGGGTGCC GAGGTCGCCC AGGTCTACGT GTCCAATTCG
CGGGGCTGGG CACTGCCGCC CGGCAACCCG ACGCAGGACG CACTGTTTCG CGCCGGCTGC
GCCGAGCGCG GCGTCCCGGT ATTCATCCAC GCGTCCCTGC TGGTCAACCT CGGCTCGCCC
ACGGCGGCGA CGGTGGAACG GTCAGCGCTG ACGCTGGCGC ACGCGCTACG CCGAGGGACG
GCGATCGGTG CCCAGGGGGT GGTGTTCCAC GCCGGCAGCG CGGTGGACGC CGGATACGCC
GACACGGCGA TGCGCCAGGT CCGGGACGTG CTGCTTCCCC TGCTGGACAC CACCGGTGAC
ACGAACGGGC CCATGCTGCT GGTCGAACCG AGCGCCGGCG GCGGGCGCTC GCTCGCCGCC
CGGGTAGAAC AGCTCGGCCC CTACCTGGAC GCGGTTGACC GGCATCCGTG GCTCGGTGTT
TGCTTCGACA CCTGCCACGC CTGGGCTGCC GGGCATGACC TGGCCGTCGA AGGTGGCATG
ACCGCCACGC TCGACACGCT GGTGAACACC GTGGGGGCAG ACCGGCTGCG GCTGGTACAC
GCCAACGACT CGAAGGACCT CTGCGGCTCC ACCCGGGACC GACACGAGAA CATCGGCAAG
GGCGCCATCG GAGAGCCCGC CTTCGCCGAG CTGATGTACC ACCCGGCGAC CGCCGGAGTA
CCGACGGTGG TCGAGACCCC CACCGAGAAG CACGTGGGCC ACGCCGCCGA CGTGGCCGTT
CTCAAGCGAC TGCGTACCTG A
|
|---|
| Protein sequence | MATMRPVGTH TPTGGGLAKA ALPYLDATGA EVAQVYVSNS RGWALPPGNP TQDALFRAGC
AERGVPVFIH ASLLVNLGSP TAATVERSAL TLAHALRRGT AIGAQGVVFH AGSAVDAGYA
DTAMRQVRDV LLPLLDTTGD TNGPMLLVEP SAGGGRSLAA RVEQLGPYLD AVDRHPWLGV
CFDTCHAWAA GHDLAVEGGM TATLDTLVNT VGADRLRLVH ANDSKDLCGS TRDRHENIGK
GAIGEPAFAE LMYHPATAGV PTVVETPTEK HVGHAADVAV LKRLRT
|
|---|
| |