| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2408 |
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| Symbol | |
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| ID | 5058871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 2704284 |
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| End bp | 2705543 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 640474667 |
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| Product | lycopene beta and epsilon cyclase |
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| Protein accession | YP_001159233 |
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| Protein GI | 145594936 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
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| TIGRFAM ID | [TIGR01790] lycopene cyclase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTGGCAGC GTGTACGGGT GACCACCGTT GACGTTGACC TCGCCCTGGT CGGTGGTGGC
GGCGCGGGCT CCCTCGTGCT CGCCGCCCTG GATCGGTGGG GCGTGCGCGG TCTGCGGGTG
GCGGTGATCG ATCCGGTGCG CCGGCGCGGC CAGGACCGGA CCTGGGCGTT CTGGGGCCGA
CCCGACGACG GGCTCGACCC GCTGTTGGCG GCGAGCTGGT CCCAGGTGGA GGTGGCGGTG
CCGGGGCGGC GTCGCGTGCT CGACCTCGCC CCGCTGCGGT ACGCGATGCT GCGTTCGGCC
CCCGTCTACG ACCAGGCAGC CACCGCCGAA CAGCGACTCG GCGCGGTCCG CGTCGCGGCC
CCGGCCGAGG CGGTCGAGGA CGACGGCAGC CGGGTCACGA TCCATGCCGG CGGGTCGACG
CTACGGGCGT CCTGGGTCCT CGACTCCCGG CCCCGCCCGC CCCGGCGAGC CGGGCGTACC
AACTGGCTCC AGCACTTCCG CGGCTGGTGG CTCGAGGCCG ACCGGCCGCT GTTCGACCCG
GGTCGGGCGG TGCTGATGGA CTTCCGTACC CCGCAGCCGG TTCGGGGCGT GTCGTTCGGG
TACGTGTTGC CGGTCACCGA CCGGTACGCG TTGGTCGAGT ACACCGAGTT CACCTCCGGC
CTGCTCACCG ACGCCGGCTA TGACGCGGCG CTGGCCGGGT ACCGGGACCG GCTCGGGCTG
GACCCGGGCC GGCTCCGGGT GCGGGAGGTG GAGAACGGGG TGATCCCGAT GACCGACGGC
CCGTTCGACC CGCGGCCCTC GCCCCGGGTG GTCCGCCTCG GCACCGGCGG TGGTGCCACC
CGACCCTCCA CCGGCTTCAC GTTCGCCGCC ATGCACCGGC AGGCGGGGCA GATCGCCGAG
GCGCTCGCCG CCGGGCGGGC GCCGGTCCCG GCACCCGCGT ACCCCCGTCG ACACCGGTGG
CTGGACGCGG TCGCGCTGCG GGCGCTGGAC CGCGGTGGGG TGGGCGGTCC CGACTTCTTC
GACCGGCTCT TCGACCGCAA CCCGGCCGAG CGGGTGTTGC GCTTCCTCGA TGGGACCACC
AGCCCGGCCG AGGAGGTCGC GTTGATGAGC ACCACCCGGC CAACACCGAT GGTCGCCGCT
ACCCTCGGTG ACGCCGCCGC CCGGCTGCGG GACCGGCTCG TCCCGTGGCG GCGGCCCGCC
CCCGGCCGAG TCCCGCCGCC GGTCACCGGC GCGCCCCGGA GCTCCCACCC GGCCGAGTGA
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| Protein sequence | MWQRVRVTTV DVDLALVGGG GAGSLVLAAL DRWGVRGLRV AVIDPVRRRG QDRTWAFWGR
PDDGLDPLLA ASWSQVEVAV PGRRRVLDLA PLRYAMLRSA PVYDQAATAE QRLGAVRVAA
PAEAVEDDGS RVTIHAGGST LRASWVLDSR PRPPRRAGRT NWLQHFRGWW LEADRPLFDP
GRAVLMDFRT PQPVRGVSFG YVLPVTDRYA LVEYTEFTSG LLTDAGYDAA LAGYRDRLGL
DPGRLRVREV ENGVIPMTDG PFDPRPSPRV VRLGTGGGAT RPSTGFTFAA MHRQAGQIAE
ALAAGRAPVP APAYPRRHRW LDAVALRALD RGGVGGPDFF DRLFDRNPAE RVLRFLDGTT
SPAEEVALMS TTRPTPMVAA TLGDAAARLR DRLVPWRRPA PGRVPPPVTG APRSSHPAE
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