Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_2110 |
Symbol | |
ID | 5058573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 2385615 |
End bp | 2387060 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640474373 |
Product | LVIVD repeat-containing protein |
Protein accession | YP_001158939 |
Protein GI | 145594642 |
COG category | [S] Function unknown |
COG ID | [COG5276] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.554457 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0831107 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGAT CCCGCACGCC GCGGTCCCGC TGGCTCGGCA CGCTGAGCCT GGCCGCGGCC GGCCTTCTCC TGACAACTGT GGTCGCCGCA GCGCCCCACG ACGCCAGGGC GGCCACCACC GAGTCCAACG CCGTCACCAC CGCGGATATC CCCGGGGTCG ACGAGATCCG CAGCAGCCCC AACCTGAGGC AGGTCGCCAA CCTGCCGAAG GAAGCACCGC TCGACGCGAC GAACAGCGAC CTCGCCTTCC AGGGCCGGTA CGCCTTCGCC GGCAACTACA ACGGCTTCGT CATCTACGAC ATCTCGCGTC CTTCCGCACC GACCGTCGTC TCACGCGTGC TCTGCCCGGG CTCGCAGAAT GACATCTCCG TCCACGGCGA CCTGCTCTTC CTCTCCACCG ACTCGCCCCG CAGCGACGAC TCGTGCGACA GCACCCGAGT GCCGTCAAGC GAGACCCAGT GGGAGGGCAT CAAGATCTTT GACATCAGCG ACAAGGCCAG TCCCCGCTAT CTGAAGAGCG TGCAGACCGC CTGCGGTTCG CACACCCACA CGCTGGTTCC CGGCCGGAAC AGCGCGACGA TGTACATCTA CGTCTCGTCG TACGGCCCGT CGGACACGTA CGTCGGCTGC CCGCCACCGC ACGACTCGAT CTCCATCGTG AAGGTGCCGG TACACCGGCC CACCGACGCC GCGGTGGTCG CCATGCCGAA TCTCTTCCCC GACGGCGGCT TCGAGGGCGT GCCGGGGCAG AAGTCGGCGA CCAGCGGTTG CCACGACATC ACCGCCTACC CGTCGAAGAA CCTGGCCGCC GGCGCCTGCA TGGGTGACGG CATCCTGATG GACATCTCGG ACCGGGAGGC TCCCCGGGTC ATCAACCGCG TCCGGGACAC CGAAAACTTC GCCTTCTGGC ACTCCGCCAC CTTCAACAAC GCCGGCACAA AAGTGATCTT CACCGATGAG CTGGGCGGTG GCGGTGCCCC CACCTGCAAC GACACCATCG GCCCCAACCG GGGGGCCGAC GCAATCTACG ACATCGTCGG TCGCGGCGAC CGCCGCACCA TGGTCTTCGG CAGCTACTTC AAGATCCCGC GGGAGAACGC CGACACCGAG AACTGTGTGG CGCACAACGG CTCGCTGATC CCGGTGTTCG GGCGGGACAT CATGGTCCAG GCGTGGTACC AGGGCGGCAT TTCGGTCTGG GACTTCACCA ACTCGGCCAG TCCCCGCGAG ATCGCGTACT GGGAGCGGGG CCCGCTGGAC GGGGAGAACC TCATCGGCGG CGGCTCCTGG TCCGCGTACT GGTACAACGG CTACATCTAC TCCAACGACA TGGTCAAGGG CCTTGACGTT CTCAAGCTCA CCGACTGGCG GACCTGGACG GCAAATTTCG TCCGCTACCC AGAGTTGAAC GTACAGACCC AGTCCGGTCG CTTCGGCCGC CGGTAG
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Protein sequence | MSRSRTPRSR WLGTLSLAAA GLLLTTVVAA APHDARAATT ESNAVTTADI PGVDEIRSSP NLRQVANLPK EAPLDATNSD LAFQGRYAFA GNYNGFVIYD ISRPSAPTVV SRVLCPGSQN DISVHGDLLF LSTDSPRSDD SCDSTRVPSS ETQWEGIKIF DISDKASPRY LKSVQTACGS HTHTLVPGRN SATMYIYVSS YGPSDTYVGC PPPHDSISIV KVPVHRPTDA AVVAMPNLFP DGGFEGVPGQ KSATSGCHDI TAYPSKNLAA GACMGDGILM DISDREAPRV INRVRDTENF AFWHSATFNN AGTKVIFTDE LGGGGAPTCN DTIGPNRGAD AIYDIVGRGD RRTMVFGSYF KIPRENADTE NCVAHNGSLI PVFGRDIMVQ AWYQGGISVW DFTNSASPRE IAYWERGPLD GENLIGGGSW SAYWYNGYIY SNDMVKGLDV LKLTDWRTWT ANFVRYPELN VQTQSGRFGR R
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