| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2007 |
|---|
| Symbol | |
|---|
| ID | 5058470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 2277613 |
|---|
| End bp | 2278314 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640474273 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001158839 |
|---|
| Protein GI | 145594542 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR03351] phosphonatase-like hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0418734 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACGTCC CGGTCGGTAC GACGCGACTC GTCTGTTTCG ACATGGCCGG TACCACGGTC
GCCGACGACG GCCTCGTCGA GCAGGCGTTC ACCCGCGCAC TGGACGAGGT CGGCTCGACC
GTCATCGACA GGGAGGCTGC GCTACGCCAC GTCCGGGACA CCATGGGCGA GTCGAAAATC
GCGGTGTTCC GGCACCTCAG CGGAGGCGAT GAGGCGGCAG CGCGGCGTCT CAACGGTGCC
TTCGAGCGGG CGTACGAGGT TCTCGTGGAC GCCGGGCTCT GCGCGCCGAT CGACGGTGCC
GAGCAACTGA TCACCAAGCT CCGTGCCGCC GGGGTGCGTA CCGCGCTCAC CACCGGCTTC
TCCCGGGCTA CCGCCGACCG CATCCTTTCC GCCCTGGGCT GGCGTGACCT CGCCGATCTG
ACCCTGGTGC CCGCCGAGGC CGGCCGTGGA CGTCCCTACC CAGACCTGGT GCTCACCGCA
CTGCTCCGAC TGGGAGTCGA CGACGTCCGC CATGTCACCA CCGTCGGTGA CACCGCCTCG
GACGTGCTCG CCGGCCGCCG TGCTGGCGCC GCCATCGTCG CCGGAGTGCT CACCGGCGCG
CATGATGCCG CCACGCTGCG TGATGCGGGC GCCACCCATG TTCTCCACTC CGTCAGTGAT
CTGGAGACCC TCCTTCTTCC CACAGACACC CCTGAGGAGT AA
|
|---|
| Protein sequence | MNVPVGTTRL VCFDMAGTTV ADDGLVEQAF TRALDEVGST VIDREAALRH VRDTMGESKI
AVFRHLSGGD EAAARRLNGA FERAYEVLVD AGLCAPIDGA EQLITKLRAA GVRTALTTGF
SRATADRILS ALGWRDLADL TLVPAEAGRG RPYPDLVLTA LLRLGVDDVR HVTTVGDTAS
DVLAGRRAGA AIVAGVLTGA HDAATLRDAG ATHVLHSVSD LETLLLPTDT PEE
|
|---|
| |