| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1872 |
|---|
| Symbol | |
|---|
| ID | 5058331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2141296 |
|---|
| End bp | 2141976 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640474142 |
|---|
| Product | ribulose-phosphate 3-epimerase |
|---|
| Protein accession | YP_001158712 |
|---|
| Protein GI | 145594415 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
|---|
| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.392536 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGTAC CGCTGCCAAT CGTCGCGCCG AGCATTCTGG CCGCTGATTT CGCCTGCCTC
GCCGACGAGG TCCGTGCCAT CGAAGACACC GCCGACTGGG TGCACGTGGA TGTCATGGAC
AACCATTTCG TGCCGAATCT GACGATTGGG CTGCCGGTCG TGCAGAGCCT GCGGGCCGCC
ACCCGGCTCC CCTTTGACGT GCACCTCATG ATCGAGGATC CGCGGCGGTG GGCGCCCGGC
TACGCCGACG CCGGGGCGTA CAACGTGACG TTTCACGCCG AGGCCTGTGA CGACCCGGTC
GCGCTGGCCA AGGACCTCCG TTCGGCCGGT GCGAAGGCGG GGCTGGCGAT CGACCGGGAC
ACGCCGATCG AACCGTACCT GGACCTGCTG CCCAGCTTTG ACACCTTGTT GATCATGACC
ATCAAGGCGG GGTTCGGTGG GCAGCGGTTC ATCCCGAACC TGTTGGACAA GGTGCGTACG
GCCCGTCGAC ACGTCGACGC TGGTCACCTG GAGCTGCGCA TCGAGGTCGA TGGTGGGATC
GCCCTGAACA CCATCGCCGA GGCCGCCGAG GCGGGCGCGG ACGCCTTTGT CGCCGGCACC
GCGGTCTTCG GTGCCGATGA TCCAGCCGAG GCCGTACGCC GGCTGCGGTC CCTGGCCCAG
AGCGCGGCGC CCCGGGCCTG A
|
|---|
| Protein sequence | MTVPLPIVAP SILAADFACL ADEVRAIEDT ADWVHVDVMD NHFVPNLTIG LPVVQSLRAA
TRLPFDVHLM IEDPRRWAPG YADAGAYNVT FHAEACDDPV ALAKDLRSAG AKAGLAIDRD
TPIEPYLDLL PSFDTLLIMT IKAGFGGQRF IPNLLDKVRT ARRHVDAGHL ELRIEVDGGI
ALNTIAEAAE AGADAFVAGT AVFGADDPAE AVRRLRSLAQ SAAPRA
|
|---|
| |