Gene Strop_1868 details

Gene Information

• Locus tag: Strop_1868
• Symbol: def
• ID: 5058327
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salinispora tropica CNB-440
• Kingdom: Bacteria
• Replicon accession: NC_009380
• Strand: +
• Start bp: 2136928
• End bp: 2137488
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 640474138
• Product: peptide deformylase
• Protein accession: YP_001158708
• Protein GI: 145594411
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 0.647129
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGACCGTCC AGCCCATCCG CCTCTTCGGC GACCCGGTGC TGCGCACGCC GGCCGACCCG 
GTGGTCGACT TCGATGTCGA ACTGCGCAAG CTCGTCGCTG ACCTGATCGA TACGATGCGT 
GAGCAGAACG GCGCTGGGCT GGCCGCGCCG CAGCTCGGCG TGGGCCTGCG GGTGTTCACC 
TTCGACGTCG ACGACGTGGT TGGTCACTTG GTCAACCCGG TGTTGGAGTT CCCCGACGCC 
GAGGAGCAGG ACGGCCCGGA AGGCTGCCTG TCGCTGCCGG GTCTGTACTT CGACACGAAG 
CGCCGGCAGA ACGTGGTCGC CAAGGGCTTC AACGGGTACG GGGATCCGAT GCAGATCGTC 
GGCACCGGGT TGATGGCCCG TTGCGTGCAG CACGAGACCG ACCACCTGGA CGGAGTCTTG 
TTCATCGACC GGCTCGACCC GGCCGGCCGC AAGGAGGCGA TGAAGGAGAT CCGCCGGGCC 
GAGTGGTACG ACCCGGCGGC CCCGCCGACG GTGAAGCTCA GTCCGCACCC CGCCAACAAC 
CCTTTCGGGC TCGGGCGGTG A 

 

Protein sequence

MTVQPIRLFG DPVLRTPADP VVDFDVELRK LVADLIDTMR EQNGAGLAAP QLGVGLRVFT 
FDVDDVVGHL VNPVLEFPDA EEQDGPEGCL SLPGLYFDTK RRQNVVAKGF NGYGDPMQIV 
GTGLMARCVQ HETDHLDGVL FIDRLDPAGR KEAMKEIRRA EWYDPAAPPT VKLSPHPANN 
PFGLGR