| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1812 |
|---|
| Symbol | |
|---|
| ID | 5058271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2071463 |
|---|
| End bp | 2073463 |
|---|
| Gene Length | 2001 bp |
|---|
| Protein Length | 666 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640474083 |
|---|
| Product | protein-export membrane protein SecD |
|---|
| Protein accession | YP_001158653 |
|---|
| Protein GI | 145594356 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.279659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACCAC CTCAAAAACA GATGCGCCCC GGGCGGCAGC TCGCCGTGCT CGGGTTCATC
TTCGTGGTCC TCTATCTTCT GGTCTTCTTC GGCGGCGGCG CGAGCGGTAG CTGGCAGGAC
CGGCTCGAGC CCAAGCTCGG TCTCGACCTG GTCGGCGGCA CGCGGCTGAC GCTGGAGGCG
ACCAACACCG TCGACGGCCA GGCGCCGACC GCGGAGAGCC TTGAGGAGGC CCGGCAGATC
ATCGAGAGCC GGGTCAACGC CTTCGGGGTC GCTGAGGCCG AGGTCGTTAC CGAGGGCGAC
CGGAACATCG TGATCTCCCT TCCCGGCGAG AACCGCGACC TGACCGAGGT CGGCAGCGCC
GCGGAGTTGC GCTTCCGGAA GGTGCTTCAG GTAACCGACG GTAGTGGTGC GGCGGCGAAC
CCGCCGCCGA GCCCGACCAG CGCCCCCTCC GCCACGCCGT CCGAATCCGC TGCGCCGTCG
GGCTCTGCCA CGCCGTCGGG CTCCGCCACG CCGTCGGGCT CCGCCACGCC GTCCGGCTCC
GCCACGCCGT CCGCAACCGG CAGCGCTTCG CCCACCCCGT CGAGCAGCGT CCAGGTCACG
GCCTCGCCGA CTGGCCAGGG CGGTGGCGCC CCGGCGCCGA GCGCGAGCGC CACCCCCTCG
GCCACGCCCA CGCCGAGCGC ATCCTCCTCG CCCAGTGCGA CACCGGCGGC GAGCGACAGC
GCCACCCCGG TGCCGGCCAG CGTCGAGGAG CAGCGCAGGG CGGTCGAGCA GAAGGTCGGT
GCGACTGCCT GGGAGGCCGC GAACGGGCTC CAGTCGCCGA CCGACCTGGC CGCCGACCCG
TCGCTGGTCG AGAAGCTCAC GCCGTTCGCA TCGCTGGACG ACCGCGAGGT CGCGGTGCTG
CCGGCCCAGA TGCAGTTCAC CGTCCCGCAG ATCACCTGTG CCCAGCTCGA TGCCCGCCCG
CCGGCGTCGA TCTCCGCCGT CGACCAACAG GCCGTCGCCT GTGAGTTCGG CAGCATCAAG
TACCTGCTCG ACCAGGCCAA GGTGGTGGGT ACCGACATCA ACGACGCCAA CGCCGTGCTC
GACCAGACCA GCCAGTGGGT GGTCAGCCTG GACTTCACCG GTTCTGGCCA GGAGAAGTGG
ACCGCGCTCA CGGGCGAGGC GTTCCGGAAC GAGGGCAATG CCTGCGACCC GAGCGCGCTC
GGGGACAGCG GCAACTGCCG GGTCGCCGTC GTGCTGGACA ACCAGGTCGT CTCCTCGCCG
GAGATCCTGG GTGTGTTGAC GAGTAACTCG CAGATCACCG GCAACTTCAC CCAGCAGGAC
GCCAGCGACC TGGCGAGCAC GCTGCGCTAC GGCGCGCTGC CGGTGACCTT CGAGCCGCAG
GCGCAGCAGA ACGTCACCGC TACCCTCGGC GCCAGCCACC TGCGGGCTGG CCTGCTCGCT
GCCGGTATCG GCATGCTGCT GGTGATCATC TACTCGTTCT TCTACTATCG GCTGCTCGGC
TCTGTGATCT TCCTGAGCCT GGTGCTCTCC GCGCTGCTCG TCTTCGGCGC ATTGGTGGTT
CTCGGCCGGC AGATCGGGTT CACCCTTACC CTCGCCGGGA TCGCCGGCAT GATCGTCTCG
CTCGGTGTGG CGGCGGACTC CTTCGTCATC TACTTCGAGC GGCTCAAGGA CGAGATCCGG
GAGGGGCGCA GCCCGCGCAG TGCGGTGTCC CGGGCGTGGA TCCGTGCCCG TCGGACGATC
ATCTCCGCCA ACGCGATCAC CCTGATGTCC GCGGTGGTGC TCTACATCGT CTCGGTCGGT
GTGGTCAAGG GCTTCGCCTT CGCGTTGGGC CTCGCCACGG TCCTCGACCT GGTGGTGGTC
TTCCTCTTCC GACACCCGAT CATGACGATG TTCGCCCGCA CCCGGGCGTT CCTGTCCCCG
CGGGTCAGCG GCCTCGGCCG GGCGTTGCCG GCCCGGGAGA AGCCGGCCCA GCCCCGCAAC
CCGCGCGCGA AGGAGGCCTG A
|
|---|
| Protein sequence | MAPPQKQMRP GRQLAVLGFI FVVLYLLVFF GGGASGSWQD RLEPKLGLDL VGGTRLTLEA
TNTVDGQAPT AESLEEARQI IESRVNAFGV AEAEVVTEGD RNIVISLPGE NRDLTEVGSA
AELRFRKVLQ VTDGSGAAAN PPPSPTSAPS ATPSESAAPS GSATPSGSAT PSGSATPSGS
ATPSATGSAS PTPSSSVQVT ASPTGQGGGA PAPSASATPS ATPTPSASSS PSATPAASDS
ATPVPASVEE QRRAVEQKVG ATAWEAANGL QSPTDLAADP SLVEKLTPFA SLDDREVAVL
PAQMQFTVPQ ITCAQLDARP PASISAVDQQ AVACEFGSIK YLLDQAKVVG TDINDANAVL
DQTSQWVVSL DFTGSGQEKW TALTGEAFRN EGNACDPSAL GDSGNCRVAV VLDNQVVSSP
EILGVLTSNS QITGNFTQQD ASDLASTLRY GALPVTFEPQ AQQNVTATLG ASHLRAGLLA
AGIGMLLVII YSFFYYRLLG SVIFLSLVLS ALLVFGALVV LGRQIGFTLT LAGIAGMIVS
LGVAADSFVI YFERLKDEIR EGRSPRSAVS RAWIRARRTI ISANAITLMS AVVLYIVSVG
VVKGFAFALG LATVLDLVVV FLFRHPIMTM FARTRAFLSP RVSGLGRALP AREKPAQPRN
PRAKEA
|
|---|
| |