| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1446 |
|---|
| Symbol | |
|---|
| ID | 5057899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1644640 |
|---|
| End bp | 1645482 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640473714 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001158290 |
|---|
| Protein GI | 145593993 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.788738 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.737233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTTCA CCAAGGGGCA TGGCACCGGC AACGACTTCG TGATTCTGCC CGATCCCGAC
GGCACGCTCG AGCTGACCCC GGACCTGGTC GCGGCCGTGT GTGACCGGCG GCAGGGGATC
GGTGGGGACG GCGTGCTGCG GGTGGTCCGC GCCGCGCGGC ACCCCGAGGG GGCGGCCCTC
GCCGGTGCGG CCGAGTGGTT CATGGACTAC TGGAACTCCG ACGGCTCCGT GGCCGAGATG
TGCGGCAACG GCGCCCGGGT CTTCGTTCGC TATCTGCTGG AAGCCGGGTT GGCCGTACCG
TCGGGCGCGG CGTTCCCGGT GGCCACCCGG GCCGGCCTCG TGCGGGCGCG GGTCGAGGGG
GAGGAACTGG CGGTCGAGAT GCGGCGGCCT CGGTTGGCCG GCGCATCGAT CGCGGTGCTC
GACGGGCTGG CCCTGCCCGG CACGGCCGTC GATGTCGGCA ACCCGCACCT GGTGTGCCCG
GTGCCCGCGG GGCTGGAGCT GGCCGCTCTC GACCTGAACC GGGCTCCGGA GATCGACCCG
GTGATCTTCC CCACCGGAGT CAATGTTGAG TTCATCACCC CCGGGGACCC GACGGGCGGC
ACCGATGGCT ACGTTCGGAT GCGGGTCTAC GAGCGGGGTA GCGCGGAGAC GCGCTCCTGC
GGCACCGGCG CGTGTGCGGT GGCCGCGGTT GTCCTGCGGG ACGCGGGCCG GGACACCGGT
GTGGTCGCCG TGGACGTGCC CGGTGGTCGC CTGGTGGTGA CCCAGACCGC TCAGGCCTGC
TGGTTGGCGG GGCCCGCCGT GCTGGTGGCG ACCGGCGAGG TCGCGGCCGA GGCCCTGGTG
TGA
|
|---|
| Protein sequence | MEFTKGHGTG NDFVILPDPD GTLELTPDLV AAVCDRRQGI GGDGVLRVVR AARHPEGAAL
AGAAEWFMDY WNSDGSVAEM CGNGARVFVR YLLEAGLAVP SGAAFPVATR AGLVRARVEG
EELAVEMRRP RLAGASIAVL DGLALPGTAV DVGNPHLVCP VPAGLELAAL DLNRAPEIDP
VIFPTGVNVE FITPGDPTGG TDGYVRMRVY ERGSAETRSC GTGACAVAAV VLRDAGRDTG
VVAVDVPGGR LVVTQTAQAC WLAGPAVLVA TGEVAAEALV
|
|---|
| |