| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1376 |
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| Symbol | |
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| ID | 5057829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 1544417 |
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| End bp | 1545745 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640473645 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001158221 |
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| Protein GI | 145593924 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.136301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGC CCCCCGCCAC CGCCCCCCGC TCCGCCTCGC CCCGCAGGAT CGCGGCGCTC
GCCCTGCCCG CCCTCGTGGT GCTCGCCGCC GAACCGCTGT ATGTGCTGGT GGACACGGCG
GTGGTGGGAC ACCTTGGCCG GGTCCCGCTC GCCGCGTTGG CGATCGGCGG CACCGTGCTG
ACGCTCATTG CCTGGCTGGG CACGGTCGTC GCGTACGGCA CCACCGGACG CTCCGCCCGG
CGGTTCGGGG CCGGTGACCG CACCGCCGCC GTCGCCGAGG GGGTCCAGGC ATCCTGGCTC
GCCCTCGCGG TGGGAGTCGT CGTCGCGGTC GGTATGCAGG CCGGCGGCGG CGTGCTCGCC
CGTACCCTCG TCGGTGCGGA CAACGACGTG GCGGAGGCCG CCGCGCAGTG GCTGCGGATC
GCGGCGCTCG GCGCACCGGG TCTGCTCCTC GCCGCGGCCG GCAACGGTTG GCTGCGGGGC
ATCCAGGACA CCCGCCGGCC GCTGTGGTTC GTGCTCGGTC CGAGCCTTCT CTCCGCGGTG
CTCTGCCCGG TGCTGGTCTA CCCCGCCGGG CTCGGCCTGC CCGGATCGGC GGTGGCCAAC
GTCGTGGCGC AGACGATCTC CGGTGCGCTC TTCGCCGGGG CGCTGGTCTC CGAACGCGTG
GCCCTACGCC CCCGCCCCCG GGTTCTCGCC CAGCAACTCG TGCTCAGTCG GGACCTGCTC
ATCCGCGGCG TCGCCTTCCA GGCGAGCTTT CTCTCCGCCA CCGCGGTGGC CGCTCGCTTC
GGCGCGGCGG CGGTCGGCGC CCACCAGATC GTCCTCCAAC TCTGGTTCTT CACCGCCCTT
GTGCTCGACG CGCTCGCCAT CGCCGCGCAG GCCCTCGTCG GCGCCGCGCT GGGTGCCGAC
GACGAAGCCG GCGCGCGCGG GTTGGCCCGT CGGATCGGGC TGCTCGGCGC CGGCTGCGGC
GTGGCGTTCG CGCTGCTCTT CGCAGCCGGC GCCGGGGTGG TCCCGGGCTG GTTCAGTGCC
GACGGGCAGG TCCGCGCGGA GGCGATGGTG GCCTGGCCCT GGTTCGTCGC GATGCTGCCG
CTGGCTGGCA TCGTCTTTGC CCTGGACGGA GTGTTGATTG GCGCGGGGGA TACCCGCTAC
CTGCGGAACC TTTCGATCGT GGCGGCGTTG GGGGGATTTC TGCCGGCTAT CTGGTTGGCG
TACGGACTGG ATCTCGGACT CGGTGGGATC TGGGCTGGGC TCGCGTTCTT CGTGGTGCTG
CGGTTGATCG CCCTGCTGTT GCGGCTGCGC TCCGGTCGCT GGGCGGTCGT CGGCGCCGTC
CGGGCCTGA
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| Protein sequence | MTSPPATAPR SASPRRIAAL ALPALVVLAA EPLYVLVDTA VVGHLGRVPL AALAIGGTVL
TLIAWLGTVV AYGTTGRSAR RFGAGDRTAA VAEGVQASWL ALAVGVVVAV GMQAGGGVLA
RTLVGADNDV AEAAAQWLRI AALGAPGLLL AAAGNGWLRG IQDTRRPLWF VLGPSLLSAV
LCPVLVYPAG LGLPGSAVAN VVAQTISGAL FAGALVSERV ALRPRPRVLA QQLVLSRDLL
IRGVAFQASF LSATAVAARF GAAAVGAHQI VLQLWFFTAL VLDALAIAAQ ALVGAALGAD
DEAGARGLAR RIGLLGAGCG VAFALLFAAG AGVVPGWFSA DGQVRAEAMV AWPWFVAMLP
LAGIVFALDG VLIGAGDTRY LRNLSIVAAL GGFLPAIWLA YGLDLGLGGI WAGLAFFVVL
RLIALLLRLR SGRWAVVGAV RA
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