| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1347 |
|---|
| Symbol | |
|---|
| ID | 5057800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1512341 |
|---|
| End bp | 1513360 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640473616 |
|---|
| Product | helix-turn-helix, type 11 domain-containing protein |
|---|
| Protein accession | YP_001158192 |
|---|
| Protein GI | 145593895 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.469049 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGAC CAGGACGGCT TCGGTCCTGG TCGTGCGGGA AGCTTCAAGG CGTGATCAGC
ACTTCCGTCC GCCTCCTGCG TCTGGCCGCG CTGCTGTCCG CACGGCCGTC GTGGACCTGT
GCCGAGTTGG CCGAGCGGAT GGAGGTCACC GATCGCACGG TCCGTCGGGA CATCGCCCGG
CTGCGGGAAC TCGGCTACGG TGTCGAGTCC GACCCCGGGC CGTGGGGTGG CTACCGCCTC
AGCGTCGGCA CCCGGGTTCC ACCACTGGTC CTCGATGACG AGGAGTCGCT CGCCGTGGCT
GTCGGGCTGC GCGAGGCCGC CCTCAGTGGC GTTCTCGGCA GTGATCAGGC CGCGCTGTCT
GCGCTGCTGA AGTTGCGGCA GGTCCTACCG CCGCGAATCG CGGACCGGCT GGGTGAGATG
GACGCCGCGT TCGTGCACAC CCCCCGGTCC CAGGAGCGAC AGATCGCGCC CGGCATGCTA
CTGGAACTGG CCACTGTGTG CCGACGCGGC GAACGTGTTC GCCTGTCGTA CCGGGACCGA
CGGGACAGGG GCACGGTCCG GGATGTTGAC CCGTACCGCC TCGTGCGGGC GGGGCGTCGC
TGGTACCTCG TCGGCCAGGA CGTGGCGCGG GGTGAGTGGC GTACGTTCCG GGCCGACCGG
GTGGAGCAGG TCCGGTCGAC CGGGCACGCG GCGAAACTCG TGGACCCGCC CGACCCGGTG
CTGCTGGTCT CCCGTGGCAT CGCGGGCGGC GCCTACCCGA TCTATGCCAC GGTTCGCCTT
CCGTTGCCTC AGGATCAGGC GCTGCGGCTG GTTCCCGCGA CGGTCGGTAC CCATGCCCCG
GACGGCCCCG ATGCCACTGT TGTGGAGATC GGCGGACCCG ACCCGGACCG GCTCGCCGCG
TACCTGCTCA GCCTGGGCAC TTCCCTGCAG GTGCTGACTC CGCGCGCGGT ACGGGTGGCT
CTCCTGCGCC GTATGCGGGA GTTGTTCGAG GTCAACGGGG GCGGCCAACT CCCGAGCTGA
|
|---|
| Protein sequence | MPRPGRLRSW SCGKLQGVIS TSVRLLRLAA LLSARPSWTC AELAERMEVT DRTVRRDIAR
LRELGYGVES DPGPWGGYRL SVGTRVPPLV LDDEESLAVA VGLREAALSG VLGSDQAALS
ALLKLRQVLP PRIADRLGEM DAAFVHTPRS QERQIAPGML LELATVCRRG ERVRLSYRDR
RDRGTVRDVD PYRLVRAGRR WYLVGQDVAR GEWRTFRADR VEQVRSTGHA AKLVDPPDPV
LLVSRGIAGG AYPIYATVRL PLPQDQALRL VPATVGTHAP DGPDATVVEI GGPDPDRLAA
YLLSLGTSLQ VLTPRAVRVA LLRRMRELFE VNGGGQLPS
|
|---|
| |