Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1236 |
Symbol | |
ID | 5057686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 1397542 |
End bp | 1399137 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640473505 |
Product | D-3-phosphoglycerate dehydrogenase |
Protein accession | YP_001158084 |
Protein GI | 145593787 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.276789 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCGG TCGTACTGAT CGCCGAAGAA CTCGCCCCCG CCGCCATCGA GGTGCTCGCC CACGACTTCG ACGTCCGACA TGTGGACGGC ACCGACCGCC CGACCCTGCT TTCGGCGCTC TCCGAAGCTG ACGCTGTCAT CGTCCGCAGT GCGACCCGAA TCGACGCCGA GGCGATCGCC GCGGCACCGC GGCTCAAGGT GGTCGCCCGG GCCGGTGTCG GCCTGGACAA CGTCGAGGTG CCGGCGGCCA CCACCCGCGG TGTCATGGTC GTCAACGCCC CCACCTCCAA CATTGTCTCC GCGGCCGAGC AGGCGGTCGC CCTCCTGCTC GCCGTCGCGC GTAACACCGC CAGCGCCAGC ACGGCGCTGA AGGTGGGGGA GTGGAAGCGG TCGAAGTACA CCGGCGTGGA GGTACAGGGC AAGACCGTCG GGGTGGTCGG CCTCGGGCGT ATTGGTGTCC TCTTCGCGCA GCGGATCGCC GCGTTCGGTA CCCGGTTGAT CGCCTATGAC CCGTACATCC AACCGGCGCG GGCCGCGCAG CTCGGCGTCC GCCTCGTCGG CCTGGAGGAG CTGCTGCGCC AGAGCGACTT CATCTCCATC CACCTGCCGA AGACGTCGGA GACGGTGGGT CTGATCGGGG AGAAGGAGCT GGCGATCGTC AAGCCCGGGG TGCGGATCGT CAACGCCGCC CGGGGCGGCC TCGTGGACGA GCAGGCCCTC GCGGACGCGA TCGCTGAGGG GCGGGTCGCT GGGGCCGGCG TTGACGTGTA CGCCAAGGAG CCCTGCACCT CATCGCCGCT GTTCGCCTTC GACAACGTGG TGGCGACCCC GCACCTGGGC GCCTCCACGC ACGAGGCGCA GGACAAGGCG GGCCTCGCCG TGGCCCGCAG CGTGAAGCTG GCGTTGCAGG GTGAGTTCGT GCCGGACGCG GTGAACGTGC AGACCGGTGG CGTGGTCGCC GAGGATGTCC GGCCGCTGCT GCCGCTGGCC GAGAAGCTCG GCCGGGCCTT CACCGCGGTG GCCGGCGGGA TCGCCGCGAG CGTGACCGTT GAGGTGCGGG GCGAGGTGGT CAGCAACGAT GTCTCGGTGC TCAAGCTCGC GGCGACCAAG GGGCTGTTCA GCTCGGTGGT GGAGGAACAG GTCACCTACG TCAACGCCCC GCATCTGGCG GCCGAGCGGG GGGTCGAGGT GTCGCTGGCT ACCAGGCCCG AGACGGCCGA CGGACCGGTG CTGGTCACCA TCCGGGGCGC CCTGCCCGAC GGCCGGACGG TGAGCGTCTC CGGCACCAGC GTCACCGGTG CCCGGGACGT CAACAAACTG ACCGAGGTGG ACGGCTTCGA CGTGGAGATC GGGGCGGAGG GCATCCTCGT CTTCCTCCGT TACGCCGACC GGCCGGGTGT TGTCGGCGCG GTCGGCACCC TGCTTGGCGA GGCCGGCGTC AACATCGCGG CGATGCAGGT GGCCCGTCGG GAGGCCGGTG GGGAAACGCT GATGACCCTC ACCGTTGACC AGGCCCTCGG AGCCGACCTC CTCACCTCCG TCGCCGATTC GGTCGGTGCG ACCTCGGTCA GCGCTGCCGA CCTGCGCGAC GAGTGA
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Protein sequence | MNPVVLIAEE LAPAAIEVLA HDFDVRHVDG TDRPTLLSAL SEADAVIVRS ATRIDAEAIA AAPRLKVVAR AGVGLDNVEV PAATTRGVMV VNAPTSNIVS AAEQAVALLL AVARNTASAS TALKVGEWKR SKYTGVEVQG KTVGVVGLGR IGVLFAQRIA AFGTRLIAYD PYIQPARAAQ LGVRLVGLEE LLRQSDFISI HLPKTSETVG LIGEKELAIV KPGVRIVNAA RGGLVDEQAL ADAIAEGRVA GAGVDVYAKE PCTSSPLFAF DNVVATPHLG ASTHEAQDKA GLAVARSVKL ALQGEFVPDA VNVQTGGVVA EDVRPLLPLA EKLGRAFTAV AGGIAASVTV EVRGEVVSND VSVLKLAATK GLFSSVVEEQ VTYVNAPHLA AERGVEVSLA TRPETADGPV LVTIRGALPD GRTVSVSGTS VTGARDVNKL TEVDGFDVEI GAEGILVFLR YADRPGVVGA VGTLLGEAGV NIAAMQVARR EAGGETLMTL TVDQALGADL LTSVADSVGA TSVSAADLRD E
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