| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1103 |
|---|
| Symbol | |
|---|
| ID | 5057550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1248155 |
|---|
| End bp | 1248901 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640473370 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001157952 |
|---|
| Protein GI | 145593655 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1234] Metal-dependent hydrolases of the beta-lactamase superfamily III |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.690546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACTGA CGGTGTTGGG TTGCGCCGGG ACTTTTCCCG GCCCGGACTC CCCCTGCTCG
GCCTACCTGG TCGAGGCCGC GGGCTTCCGA CTCCTGGTCG ACTTCGGCTC CGGGTCGCTG
TCGACCCTCC AGCGTTACGC GGGCCTGCAC GCTCCCGACG CCGTCCTCCT CACCCACCTC
CACGGTGACC ACTTCCTCGA CGCCGCGATC TACGTGGTGG TCCGCCGGTA CGCCCCGGAG
GGCCCCTATC CACCGCTGCC GGTGTACGCC CCGGAGGGCG CATCGGAGCG GCTCGCCGCC
CTCGGTGGAG TGCAGGACGG GACCCTCGAG GATGTGTACC AGTTCTCCAC CCTGACACCG
GGGACCTTCC CGATCGGCCC GCTGACCGTC ACCGTCGACC GGGTCAACCA CCCGATCGAG
ACGTATGGGG TCCGGCTGGA ACACAACGGT CGGCTGCTCT GCTACTCCTC TGACACCGCC
CCCTGCGACG CGCTGCTCAA ACTGGCCCAG GGAGCCGACG TGTTTCTCTG CGAGGCGAGC
TACCTGGACG GCGTGGACAA CCCGCCGGAC CTTCACCTGA CCGGCGGGGA GGCCGGCGAA
GTCGCCACCA AGGCCGGCGT CGGCCGGCTG CTGCTGACCC ACCTCGTGGC GGCCTGGGGC
AGCGAGGCGC GCACCGTCGC GTCCGCCGCC GCTGCCTACG CCGGTCCGCT CGAGGTGGTC
CGGCCGGGTG CGCGCTACGA GGTCTGA
|
|---|
| Protein sequence | MRLTVLGCAG TFPGPDSPCS AYLVEAAGFR LLVDFGSGSL STLQRYAGLH APDAVLLTHL
HGDHFLDAAI YVVVRRYAPE GPYPPLPVYA PEGASERLAA LGGVQDGTLE DVYQFSTLTP
GTFPIGPLTV TVDRVNHPIE TYGVRLEHNG RLLCYSSDTA PCDALLKLAQ GADVFLCEAS
YLDGVDNPPD LHLTGGEAGE VATKAGVGRL LLTHLVAAWG SEARTVASAA AAYAGPLEVV
RPGARYEV
|
|---|
| |