Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1032 |
Symbol | |
ID | 5057478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 1171660 |
End bp | 1172682 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640473301 |
Product | regulatory protein, LysR |
Protein accession | YP_001157884 |
Protein GI | 145593587 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.205894 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCCGATC ACGCGGACTT CAGCCTGGCT CAACTCCGGT ACTTCGTAAC TTCCGCCGAG ATGGGAAACA TATCCGGCGC GGCACAGCAA TTACATGCTT CGCAGTCGGC CGTCTCGATG GCGATCCAGC GCCTGGAGAA ACAACTGGAC ACCAAGCTGT TCTTCCGGCA CCGCACCAAA GGAGTCAGCC TGACTCCCAG CGGCCGCGTC CTGCTCGACC CCGCGAAGTC GTTGCTGGCC CAGGCGCAGG AGATGCTCGC CCACAGCCGC GAGTGGCAGG GCGAGACCTG CGGAATGCTC AATGTGGCCG TTCTCCGCTC AGTCGCGCCC GATCTGGTGC CGGCTGTGAT GAGCCGAGTA AAGAAGATGC GCCCTGGGCT GGCGGTCACC GTCCACGAGG GAACCATGGA CGATGTTCTC GAACTGCTGC GCACGGGCAC GTGTGAACTC GCCGTAGTCC CGGAGCTGCC AGGTCAGGCT CTGTCGTTCG CCCGGCTGGC GAAGGTGCTC ATGGCAGCGG TCGTTGCATG GTCCGATCCG CTGGCGCCCG TGGGGCGCGC AACGCTTCGA CAGTTGGCCA CCCGGCGTCT CCTCGTGGCC GACCTGGACG TTGATCGCCA AGTCGGCCTG GACACCCGGA CACGGCTGTT CGCCGACGCC GGCACCCCCA CGCCAGAGGT GGTGCTGACA TCGAGCATCG CCACGATGCT TGGCCTCGTC GGGGTCGGCG AGGGCTTCGC CCTGCTATAC CGGACCGCAG CCAGCCAGTG CTACCGACAG GAACTCGCCT GGATCGACAT CGTCTCCGAA CGCCCGTGCG CATCCTGGCT TGGTGTGGCG ACCATACCCG GCCTGGCTCT CAGCAGCCGT GCGGAGCTAT TCGTTTCCCT GCTCGATGAC GCTGTCCGGA GCGTCTACTG CACGACGGCG GACGACGGGG TGAGTTCCCC TGGCAGCACT GATATCTTCG ATCATGGAGC CTCTTTTGCT ACGGACCCCG CCGCACCCGC CTGGTCGACC TAG
|
Protein sequence | MADHADFSLA QLRYFVTSAE MGNISGAAQQ LHASQSAVSM AIQRLEKQLD TKLFFRHRTK GVSLTPSGRV LLDPAKSLLA QAQEMLAHSR EWQGETCGML NVAVLRSVAP DLVPAVMSRV KKMRPGLAVT VHEGTMDDVL ELLRTGTCEL AVVPELPGQA LSFARLAKVL MAAVVAWSDP LAPVGRATLR QLATRRLLVA DLDVDRQVGL DTRTRLFADA GTPTPEVVLT SSIATMLGLV GVGEGFALLY RTAASQCYRQ ELAWIDIVSE RPCASWLGVA TIPGLALSSR AELFVSLLDD AVRSVYCTTA DDGVSSPGST DIFDHGASFA TDPAAPAWST
|
| |