| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0884 |
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| Symbol | |
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| ID | 5057327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 989631 |
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| End bp | 993281 |
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| Gene Length | 3651 bp |
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| Protein Length | 1216 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640473153 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001157739 |
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| Protein GI | 145593442 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACCG GACTCTTCGT CGCCGCCCTC GCCGACCCGG CCCTGGCTCG GGCTCGAGAC
CTGGCGCGAT CCGGCGCGGC CCAGGTTGAC GGGCTTGACC TGACCGCACC GCCGGCGCTT
CGCCCGTTCG CGGTCGCCGC CGTCGCGGCC GACGAGCCAG TGGGGGGCGC GGGGCGCCCG
GTGCTGGCGG TCACCGCCAC CAGCCGGGAG GCGGAGGACC TCGCCGTCGC GTTGGGCAGC
CTGATCCCCG CCGACCAGGT GGCGGTCTTC CCCTCCTGGG AGACGCTGCC GCACGAGCGG
CTCTCGCCAC GTTCCGACAC GGTGGGTCGC CGGCTGGCGG TGCTCCGTCG TCTCGCCCAC
CCCGAGGCGA CCGACGCGCA GGGGCGCAGT GGCCCGCTGC GGGTGGTCGT CGCTCCGGTC
CGGTCCCTGT TGCAGCCCCA GCTCAAGGGG CTGGGGGAGC TGGAGCCGGT ACGGCTGTCC
GCCGGCGACG AGGCTGACCT CGAAGACGTG GCGCGCCGGC TCACCGACAT GGCGTACGCG
CGGGTGGACC TGGTCACCAA ACGCGGTGAG TTCGCCGTGC GCGGCGGCAT CCTCGATGTC
TTCCCGCCCA CCGACGAGCA TCCGTCCCGG GTCGAGTTCT GGGGCGACGA GGTGGAGGAG
ATCCGTACCT TCGCCGTGGC CGACCAGCGC ACCATCGAGC TGGTCGACCA ACTCTGGGCC
CCGCCCTGCC GGGAGCTGCT GCTCACCCCG CCCGTCCGGA AGCGGGCCGC CGTTCTGGCG
GCGGAGTACC CGGAGTTGGC GGAGATCCTC GACCGGCTGG CCGAAGGCAT ACCGGTCGAG
GGAATGGAGT CACTCGCTCC GGTGCTGATC GGCGCCGACT CGATGGAGCT GCTGCTGGAC
AGCATGTCAG CGGGGACCCA CGTGCTGCTC TGCGATCCGG AGCGGATTCG CACCCGGGCG
CATGACCTGG TGCGTACCTC GGCGGAGTTC CTCCAGGCGA GCTGGGCCGC GGCCGCGGTC
GGCGGTGCGG CCCCGATCGA CCTCGGCGCG GCCGCCTTCC GGACGCTCGC CGATGTCCGC
GCGCGGGCCC GCGTGCTGGG GCAGCCGTGG TGGACGATCT CCCCGTTCGG GCTGACCGAG
CCGGCCCCCG CGCGCCAGCC ATGGGAAGAC GAGCCGGACG AGGTCGACGT CACCCCGGAC
GACGCGATCG CGGTGACGGT GGCGGCCCAG CCCGCGCCGC TGTACCACGG TGAGACGGCG
CGGGTGGTGG ACGAACTGAG GCGTTGGGCC GGCGAGGGCT GGTCGGTCGC GTTGGTCTTC
GAGGGACACG GCCCCGCCCA GCGGGCCGTC GAGGTGCTGC ACGACGCCGG GCTCGGCGCC
CGCCTGGTCG ACGAGGTGCC CTCGGCGCCG ACTGCCGGCC AGATTCTGGT CAGCCGTGGG
TCGCTGACCG GTGGTTTCGT CGCCGAGGCA TCCCGTTTCG TCCTGCTCAC CGGGGACGAT
GTCACCGGCG GCCGGGGTGC GTCGACGCGG GACATGCGCA AGCTGCCGAG CCGGCGACGC
AACACGATCG ATCCGTTGGA GCTGCGGGCA GGTGATCACG TGGTGCACGA GCAGCACGGC
ATCGGCCGCT ACGTCGAGTT GGTGCAGCGC ACCGTCAACG GGGCCAGCCG GGAGTACCTG
GTCATCGAGT ACGCCCCAAG TAAGCGCGGC CAACCGGGCG ACCGGCTCTT CGTCCCCACC
GACCAGCTCG ACCAGCTCTC CCGGTATGTC GGCGGTGAGC AGCCGACCCT GCACAAGATG
GGCGGGTCGG ACTGGCAGAA GTCGAAGGCC CGGGCCCGCA AGGCCGTCCG GGAGATCGCC
GCGCAGCTCA TCCAGCTCTA CGCTGCCCGC AAGGCGTCCA AGGGGCACTC GTTCGGCCCG
GACACCCCGT GGCAGCGGGA ACTGGAGGAC GCCTTCCCCT GGCAGGAGAC GCCGGACCAG
CTCGCGGCGA TCGAAGAGGT TAAACGGGAC ATGGAGCAGA CCGTCCCGAT GGACCGGCTG
ATCTGCGGCG ATGTCGGCTA CGGCAAGACC GAGATCGCCG TCCGGGCGGC GTTCAAGGCG
ATCCAGGACG GTCGGCAGGT GGCGGTGCTG GTGCCCACCA CCCTGCTGGT GCAGCAGCAC
TACAACACCT TTGCCGAGCG GATGAGCCAG TTCCCGGCCA CGATTCGCCA GCTGTCTCGG
TTCCAGACGC CGAAGGAGGC CGAGCAGACC CTGGAGATGG CCGCCGCCGG CACCGCCGAC
ATCGTCATCG GCACCCACCG GCTGCTTCAG GCGTCCGCCC GGTTTCGGTC CCTGGGGCTG
GTCATCGTGG ACGAGGAGCA GCGCTTCGGC GTCGAGCACA AGGAGCACCT CAAGTCGGTG
CGGGCCTCGG TTGACGTGCT GAGCATGTCG GCCACCCCGA TCCCCCGGAC GCTGGAGATG
GCGATCACCG GCATCCGGGA GATGTCCACC ATCGCCACCC CACCGGAGGA ACGGCACCCG
GTGCTCACCG CGGTCGGGGC GTACGACGAG CGGCAGGTGG CCGCCGCCAT CCACCGCGAG
CTGCTCCGGG ACGGCCAGGT CTTCTACCTG CACAACCGGG TGGAGTCGAT CGAGCGCGCG
GCGCGGCGGC TGCGGGAGTT GGTGCCCGAG GCGCGGGTCG CGGTGGCGCA CGGACAGCTG
GGTGAGGAGG CCCTGGAGCG GGTCATGGTC GGCTTCTGGG AGAAGGAGTT CGACGTCCTG
ATCTGCACCA CGATCGTCGA GTCCGGCATC GACATCCCGA ACGCCAACAC CCTGATCGTC
GAGCGGGCCG ACCTGCTCGG CCTGGCCCAG CTACACCAGA TTCGGGGCCG GGTCGGCCGG
GGCCGGGAGC GGGCGTACGC GTACTTCCTC TATCCGTCGG ACAAGCCGCT CACCGAGCAC
GCCCACGAGC GGTTGGCGAC CATCGCCCAG CACACCGAGT TGGGTGCCGG CATGTACGTG
GCGATGAAGG ATCTGGAGAT CCGGGGCGCC GGAAACCTGC TCGGCGGCGA GCAGTCCGGC
CACATCGAGG GCGTCGGGTT TGACCTGTAC GTGCGGATGG TGGGGGAGGC GGTGCAGGCC
TTCAAGGGGG AGCGCCCGGA GGAGGAGCCG GAGATCAAGG TCGATCTGCC GGTGGATGCC
CACCTGCCGC ACGACTACGT CGGGGTGGAG CGGCTGCGCC TGGAGATGTA CCGCAAGCTC
GCCGAGGCCC GGGATGAGGA ACGGCTGCGC GCGGTGGTCG CCGAGCTGAC CGACCGCTAC
GGTGAGCCGC CCGCCCCCGT GCAGAACCTG GTGGCGGTGG CCCGGTTCCG GCTGCTCGCC
CGGCACTACG GGCTCACCGA CGTCAGCATG CAGGGGCGCA ACATCCGGTT CGGCCCGTTG
CCGCTACCGG ACTCGAAGCA GCTGCGGCTC AAGCGCTATC ACCCGGACGC GGTCTACAAG
CAGGCGCTGG ACCAGGTCAG CGTGCCCCGG CCGAGTACCC GGCGGGTCGG TGGCGAGCCC
CTGCGCGACC AGGCGTTGCT GGAGTGGTGT GGGCAGCTCC TCGCCGACGT ACTCGGCCCG
CCCCCGGAGC TGGCCGCTGC CGCCGACTCA ACGGCGCACG GTCGGCGGTG A
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| Protein sequence | MLTGLFVAAL ADPALARARD LARSGAAQVD GLDLTAPPAL RPFAVAAVAA DEPVGGAGRP
VLAVTATSRE AEDLAVALGS LIPADQVAVF PSWETLPHER LSPRSDTVGR RLAVLRRLAH
PEATDAQGRS GPLRVVVAPV RSLLQPQLKG LGELEPVRLS AGDEADLEDV ARRLTDMAYA
RVDLVTKRGE FAVRGGILDV FPPTDEHPSR VEFWGDEVEE IRTFAVADQR TIELVDQLWA
PPCRELLLTP PVRKRAAVLA AEYPELAEIL DRLAEGIPVE GMESLAPVLI GADSMELLLD
SMSAGTHVLL CDPERIRTRA HDLVRTSAEF LQASWAAAAV GGAAPIDLGA AAFRTLADVR
ARARVLGQPW WTISPFGLTE PAPARQPWED EPDEVDVTPD DAIAVTVAAQ PAPLYHGETA
RVVDELRRWA GEGWSVALVF EGHGPAQRAV EVLHDAGLGA RLVDEVPSAP TAGQILVSRG
SLTGGFVAEA SRFVLLTGDD VTGGRGASTR DMRKLPSRRR NTIDPLELRA GDHVVHEQHG
IGRYVELVQR TVNGASREYL VIEYAPSKRG QPGDRLFVPT DQLDQLSRYV GGEQPTLHKM
GGSDWQKSKA RARKAVREIA AQLIQLYAAR KASKGHSFGP DTPWQRELED AFPWQETPDQ
LAAIEEVKRD MEQTVPMDRL ICGDVGYGKT EIAVRAAFKA IQDGRQVAVL VPTTLLVQQH
YNTFAERMSQ FPATIRQLSR FQTPKEAEQT LEMAAAGTAD IVIGTHRLLQ ASARFRSLGL
VIVDEEQRFG VEHKEHLKSV RASVDVLSMS ATPIPRTLEM AITGIREMST IATPPEERHP
VLTAVGAYDE RQVAAAIHRE LLRDGQVFYL HNRVESIERA ARRLRELVPE ARVAVAHGQL
GEEALERVMV GFWEKEFDVL ICTTIVESGI DIPNANTLIV ERADLLGLAQ LHQIRGRVGR
GRERAYAYFL YPSDKPLTEH AHERLATIAQ HTELGAGMYV AMKDLEIRGA GNLLGGEQSG
HIEGVGFDLY VRMVGEAVQA FKGERPEEEP EIKVDLPVDA HLPHDYVGVE RLRLEMYRKL
AEARDEERLR AVVAELTDRY GEPPAPVQNL VAVARFRLLA RHYGLTDVSM QGRNIRFGPL
PLPDSKQLRL KRYHPDAVYK QALDQVSVPR PSTRRVGGEP LRDQALLEWC GQLLADVLGP
PPELAAAADS TAHGRR
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