| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0832 |
|---|
| Symbol | |
|---|
| ID | 5057275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 928485 |
|---|
| End bp | 930128 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640473101 |
|---|
| Product | methylmalonyl-CoA mutase, large subunit |
|---|
| Protein accession | YP_001157687 |
|---|
| Protein GI | 145593390 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
|---|
| TIGRFAM ID | [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.682429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0142114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGGGCGT GTGCCCAATC CCTCATCCGG TGCCGGAGCA GGTGGTCTTA CCATCCGGTA
ATGAGCGAAC GGCGGTCAAG CGAGTCCGGT TTCCCGATCC AGGGCGTCTA CACGGCGCCC
GACCTCCCGG AGGACCTGGA CTCCCGGCTG GGCGGCCCGG GGGAGTACCC GTACACCCGC
GGGGTCTACC CCACCATGTA CACGGCGCGT CCCTGGACGA TGCGCCAGTA TGCCGGCTTC
GGAACCGCCG CGGAGTCCAA CGCGCGCTAC CACCAGCTGC TGCGGGCGGG CACGATGGGG
CTCTCCGTCG CCTTCGACCT GCCCACCCAG ATGGGGTACG ACTCGGACGA GCCGATCGCG
CACGGTGAGG TCGGCAAGGT GGGTGTCGCC ATTGACTCCA TCGAGGACAT GCGGCTGCTC
TTCGACGGCA TCCCGCTGGA CAAGGTCTCC ACGTCGATGA CGATCAACGC GCCGGGCTCG
GTGCTGCTCC TGCTCTACCA GTTGGTCGCC GAGGAGAACG GCGTGCCCGG GGCGGCGTTG
AACGGCACGA TCCAGAACGA CATTCTCAAG GAGTACATCG CCCGCGGGAC GTACATCTTC
CCGCCGAAGC CCTCGCTGCG CCTGGTCGCG GACACCTTCG CCTACTGCCG CGCCGAGGTG
CCGAAGTGGA ACACCATCTC CATCTCCGGC TACCACATGG CCGAGGCGGG AGCGTCACCC
GTTCAGGAGA TCGCGTTCAC CCTGGCCAAC GGGGTCGAGT ATGTGCGCGC GGCGATCGCC
GCCGGGCTCG CGGTGGACGA CTTCGCACCC CGGCTGTCGT TCTTCTTCGT CGCCCGCACG
ACGCTGTTGG AGGAGGTGGC GAAGTTCCGT GCCGCCCGGC GGATCTGGGC GCGGCTGATG
CGGGACGAGT TCGGGGCGAA GAATCCGAAG TCGATGATGC TCCGCTTCCA CACCCAGACC
GCCGGCGTGC AGCTCACCGC CCAGCAGCCG GAGGTGAACC TGGTACGGGT GGCGGTGCAG
GGGCTCGGCG CGGTACTCGG CGGAACGCAG TCGCTGCACA CCAACAGCTT CGACGAGGCG
ATCGCGCTAC CGACGGAGAA GGCCGCCCGG CTCGCGCTGC GAACGCAGCA GGTGCTCGCC
TACGAGACGG ATCTGACCGC CACGGTTGAC CCGTTCGCCG GTTCATACGT GGTGGAGGCG
ATGACGGCCG AGATCGAGGC CGCGGCGGAG GGGTTGATGC AGCGGGTCTT CGAGCACGGG
TCGGCGGTTG AGGCCATCGA GGTCGGGTTC CAGAAGCGGG AAATCGAGCA GTCGGCGTAC
CAGATCGCGC AGCAGATCGA CTCCGGCGAG CGGGTCGTGG TGGGCCTCAA TCGGTTCGCG
GTGGACGAGG AGGAGCCGTA CGAGCCGCTG CGGGTCGACC CGGCGATCGA GGTCGCGCAG
GCTGAGCGGC TGGCGACGTT GCGGGCCGAG CGGGACGCTG GGGCGGTCGA GCACGCCCGG
GCGCAGCTGC GGGCGGCGGC TGAGGGAAGC GGTAACGTGC TCTACCCGAT GAAGGAGGCG
CTGCGCGCTC GTGCCACGGT TGGCGAGGTC TGCGGCACGC TCCGTGAGGT CTGGGGGATG
TACCGCCCCT CTGACCGTTT CTGA
|
|---|
| Protein sequence | MGACAQSLIR CRSRWSYHPV MSERRSSESG FPIQGVYTAP DLPEDLDSRL GGPGEYPYTR
GVYPTMYTAR PWTMRQYAGF GTAAESNARY HQLLRAGTMG LSVAFDLPTQ MGYDSDEPIA
HGEVGKVGVA IDSIEDMRLL FDGIPLDKVS TSMTINAPGS VLLLLYQLVA EENGVPGAAL
NGTIQNDILK EYIARGTYIF PPKPSLRLVA DTFAYCRAEV PKWNTISISG YHMAEAGASP
VQEIAFTLAN GVEYVRAAIA AGLAVDDFAP RLSFFFVART TLLEEVAKFR AARRIWARLM
RDEFGAKNPK SMMLRFHTQT AGVQLTAQQP EVNLVRVAVQ GLGAVLGGTQ SLHTNSFDEA
IALPTEKAAR LALRTQQVLA YETDLTATVD PFAGSYVVEA MTAEIEAAAE GLMQRVFEHG
SAVEAIEVGF QKREIEQSAY QIAQQIDSGE RVVVGLNRFA VDEEEPYEPL RVDPAIEVAQ
AERLATLRAE RDAGAVEHAR AQLRAAAEGS GNVLYPMKEA LRARATVGEV CGTLREVWGM
YRPSDRF
|
|---|
| |