Gene Strop_0292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_0292 
Symbol 
ID5056730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp334015 
End bp334968 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content71% 
IMG OID640472564 
Productpolysaccharide deacetylase 
Protein accessionYP_001157155 
Protein GI145592858 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.858762 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGACGA AAGGCGGCGG ACCCACCCGA ATGGGCGGGC TGAGGCAGTT CACCCCAGCC 
ACCCGTTCCC TCGCCATCGC AGCAGTGGTC GTGATCGCGC TGCTCGGTTC CGCGTTCGCG
ATCGGGCGCG GAATCGCGCC GACAGGGGCC CCGGTCACCA GCAGCGCCAC CACGCCGCAT
CCGACCGACC AACCAGCTGC GCCCGAGACC CCGGCCCCCG ACGACAGCTC CGCGACCGCG
GAGGCGCACG ACGGCGGCAC GGTAGCCGTC CCGGAGCCGA CCGCGGTTGA CGAGAGCTCG
CCGGCCGCCG CCGAACCGAC CGCTCCGGAG CCGACCGCGA GTAGCGACTA CTACGACGAA
GGCACCCAGC GCACCACCGG AACCTCGACC GTGGCCCTCA CCTTCGACGA CGGGCCCAAC
CCCCAGTACA CCCCACAGAT CCTCACGTCC CTACGGGAGT ACGGGGTCAC CGCCACCTTC
TGCGTGACCG GCAAGAACGC CAGCGCCTAC CCGGAGCTGA TCCAAGCGAT CGTGGCCGAC
GGCCACACCC TGTGCAACCA CACCTGGAAC CATGACATCG CCCTCGGCTC CCGGTCCCCG
GATGAGATCC GGGCGGACCT GATCCGGACC AGCGACGCGA TCCACGCCGC CGTCCCCGAC
GCCCCCATCG CCTACTACCG CCAGCCCGGC GGCGCCTGGA CCTACTCGGT CGTGTCGGCG
GCCCAGGAGT TGGGCCTGAC CCCGCTGCAC TGGACGATCG ACCCACGGGA CTGGGAGACA
CCCGGCGCCG ACCCCATCGC GACGACCGTG CTCGACGAGG TGGGACCCGG CTCGATCGTG
CTCCTGCACG ATGGGGGCGG GCCCCGGCAG GACACCGTGG ACGCGCTCAG CCAGATCCTG
CCGGAGCTCA TCACCCGCTT CCCGGTCGCG GCGCTGCCAC CCAGCATCAC CTGA
 
Protein sequence
MQTKGGGPTR MGGLRQFTPA TRSLAIAAVV VIALLGSAFA IGRGIAPTGA PVTSSATTPH 
PTDQPAAPET PAPDDSSATA EAHDGGTVAV PEPTAVDESS PAAAEPTAPE PTASSDYYDE
GTQRTTGTST VALTFDDGPN PQYTPQILTS LREYGVTATF CVTGKNASAY PELIQAIVAD
GHTLCNHTWN HDIALGSRSP DEIRADLIRT SDAIHAAVPD APIAYYRQPG GAWTYSVVSA
AQELGLTPLH WTIDPRDWET PGADPIATTV LDEVGPGSIV LLHDGGGPRQ DTVDALSQIL
PELITRFPVA ALPPSIT