Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_0292 |
Symbol | |
ID | 5056730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 334015 |
End bp | 334968 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640472564 |
Product | polysaccharide deacetylase |
Protein accession | YP_001157155 |
Protein GI | 145592858 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.858762 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGACGA AAGGCGGCGG ACCCACCCGA ATGGGCGGGC TGAGGCAGTT CACCCCAGCC ACCCGTTCCC TCGCCATCGC AGCAGTGGTC GTGATCGCGC TGCTCGGTTC CGCGTTCGCG ATCGGGCGCG GAATCGCGCC GACAGGGGCC CCGGTCACCA GCAGCGCCAC CACGCCGCAT CCGACCGACC AACCAGCTGC GCCCGAGACC CCGGCCCCCG ACGACAGCTC CGCGACCGCG GAGGCGCACG ACGGCGGCAC GGTAGCCGTC CCGGAGCCGA CCGCGGTTGA CGAGAGCTCG CCGGCCGCCG CCGAACCGAC CGCTCCGGAG CCGACCGCGA GTAGCGACTA CTACGACGAA GGCACCCAGC GCACCACCGG AACCTCGACC GTGGCCCTCA CCTTCGACGA CGGGCCCAAC CCCCAGTACA CCCCACAGAT CCTCACGTCC CTACGGGAGT ACGGGGTCAC CGCCACCTTC TGCGTGACCG GCAAGAACGC CAGCGCCTAC CCGGAGCTGA TCCAAGCGAT CGTGGCCGAC GGCCACACCC TGTGCAACCA CACCTGGAAC CATGACATCG CCCTCGGCTC CCGGTCCCCG GATGAGATCC GGGCGGACCT GATCCGGACC AGCGACGCGA TCCACGCCGC CGTCCCCGAC GCCCCCATCG CCTACTACCG CCAGCCCGGC GGCGCCTGGA CCTACTCGGT CGTGTCGGCG GCCCAGGAGT TGGGCCTGAC CCCGCTGCAC TGGACGATCG ACCCACGGGA CTGGGAGACA CCCGGCGCCG ACCCCATCGC GACGACCGTG CTCGACGAGG TGGGACCCGG CTCGATCGTG CTCCTGCACG ATGGGGGCGG GCCCCGGCAG GACACCGTGG ACGCGCTCAG CCAGATCCTG CCGGAGCTCA TCACCCGCTT CCCGGTCGCG GCGCTGCCAC CCAGCATCAC CTGA
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Protein sequence | MQTKGGGPTR MGGLRQFTPA TRSLAIAAVV VIALLGSAFA IGRGIAPTGA PVTSSATTPH PTDQPAAPET PAPDDSSATA EAHDGGTVAV PEPTAVDESS PAAAEPTAPE PTASSDYYDE GTQRTTGTST VALTFDDGPN PQYTPQILTS LREYGVTATF CVTGKNASAY PELIQAIVAD GHTLCNHTWN HDIALGSRSP DEIRADLIRT SDAIHAAVPD APIAYYRQPG GAWTYSVVSA AQELGLTPLH WTIDPRDWET PGADPIATTV LDEVGPGSIV LLHDGGGPRQ DTVDALSQIL PELITRFPVA ALPPSIT
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