| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_0189 |
|---|
| Symbol | |
|---|
| ID | 5056625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 214716 |
|---|
| End bp | 219023 |
|---|
| Gene Length | 4308 bp |
|---|
| Protein Length | 1435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640472459 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001157052 |
|---|
| Protein GI | 145592755 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.335759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.93166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCAG AGGTGACCAG TGACGCCGGA GCGCGGCCGA GGCGGGCCCG ACGTCTGGAC
CGGGGATTCC GGCACCTCGC CATCTGCGTC GTCCTCACCG CCCTCGCCTT CCAGCAGGCT
CCCGGGCTGA TCGTCCCCGA CACCAAGGTC GACCTGAACG TCAATCCCGC CGGATGGCTG
CTCCGCTCTT TGCACCTCTG GGACCCCACC GGCGCCTTCG GCCAGCTACA GAACCAGGCC
TACGGGTATC TGTGGCCGAT GGGTCCGTTC TTCCTGGTGG GCTCGGAGCT GGGCCTGCAA
CCGTGGGTGA TTCAACGGTT GTGGTGGGCG CTGCTCTTCT GCGTCGCCTA CCTGGGCGTG
GTGCGACTGG CCGGCAGCCT CGGCATCGGC TCGCCCACCG GACGCATGAT CGCTGGTGTC
GCCTTCGCAC TGTCGCCCCG GATCCTCACC CAGCTCGGCT GGTCCTCGGT CGAATCCTGG
CCCAGCGCGG TGGCGCCGTG GGTACTGATC CCCCTGATCG GCCTCGCCCG AGGTGCGCCC
CTCCGCCGGG CGGTCGCGGG GTCGGCACTC GCCGTGGCCT GTGCGGGCGG GGTCAATGCG
ACCGCCGTGT TCGCGGTGGT ACCGCTCGCC CTGCTCTGGC TCGCCACGCT GGCACCGATC
GGCCGCCGAA TCAGCGCAAT CGCCGCCTGG TGCGGCGCGG TGGCCCTGGC CACCGCCTGG
TGGCTGGTTC CCCTGCTCAT TCTCGGGCGG TACAGCCCAC CGTTCCTCGA CTACATCGAA
ACCGCCCAGA GCACCACCAG CGTGACCGAC GCCGTGACGA CGCTGCGCGG CGCGTCGTAC
TGGGTGGCGT ACCTGGCCTC CCCGGTTGAA CAGGCCATCC CCGGCGGCGC CCGGTTGGCC
AACGAGCTTC CGCTGATCCT CGCCACGCTC GCCGTCGCCG CCCTGGGTGT ACTGGGGCTT
TCCCGGCGCG GAATGCCGCA CCGCCGCTTC CTGGTCACCG GCCTGATGCT CGGCGCCGCG
ATGGTCGGAC TCGGACACGT CAGCGATCTT CCCAATCTCC TCGCCGGGCC ACAGCAGCAG
TTCCTCGACG GGATCGGCGC GCCACTACGG AACACCCACA AATTCGACGT CCTGCTCCGG
CTACCGCTGA CGCTCGGGTT AGCCCACCTG GTCAGCCTGG TCGTGAAGGC AGCGCGTACC
GCACCCGCCG CGCGACACAA AAAGGCCGTG GCGCGGGCCT GGATCACCAC CGGCGTGACC
ATGGCAGCAG TCGCGGCGGT CGCCAGCCCA GCGATCATCG GCGGGATCGC CACCCCGGGA
AGCGCGCGGG AGGTGCCCCC ATACTGGCAG GACGCCGCCG ACTGGCTGGA CGCGAACACC
GGTCCGGGAC GGGTGCTCGT CGTCCCCGGA GCACGCCGCC CCGCCTACGA CTGGGGCAGC
ACCACCGACG AGATCGCCCA ACCGCTGTTG GAGAGCAGCT GGGCTGTCCG CAACTCCATC
CCCTTCACCC CGCCCACCAC CATCCGCCTC CTGGACGCGA TCGAAGCCAC GCTCAGCTCC
GGCGCCGGCT CGGCGGGCCT CGCCGACCTC CTCGCCCGCT CCGGGGTCAG CCACGTCCTG
TTCCGCGCCG ACCTCGACCA CGGTCGCTCC GACACGACCC GCCCCGCCGT GGTTCGCCAG
GCCCTACAGC GCTCACCGGG GCTGACCCGG GTCACCACCT TCGGCCCGAT CCGGGGTGGG
CCGGAGGCAG TGGACGACAT TCCCGACCAA GGGCTCGACG TGCCGGGACG GGCACTCGAG
GTCTACCAGG TCAACCGCCG GGTGGAGCCG GTTGTCGCCT ACGACCGAAA GGATGTCGCC
ACCGTCGTCG GTGGTCCGGA GTCCCTGCTC GACCTCGCCG CGGCGGGCCT GTTGAGCCCG
GCCCCCACGG TCCTGGCCGG TGACGCGGAC ACCGACGACC TCTCCGGTCC GGTCGCGATG
ACCGACGGGC TCCGGCGCCG CGAGGTCTCC TTCGGCCGGT CCCAGGACAA CGCCTCACAT
ACCCACACCG CCGACGAGAC CCTCGCACCG TCCGCACCCG CGCACGACTA CCTGCCCGAT
TGGGCCGAGA ACTGGTCCAC CGTGGCCCAG TTCGAGGGCA TCAACTCGAT TCGCACGTCA
ACGGCACGCT CGCAGGTCAG CATCCCCGGT GGCAACCGCT CCGAGCATCA GCCGTATGCG
GCGATGGACG GCGACCCGAC GACCTCCTGG CAGTCCGCAC CGTACAGCCG CGGCGATCGG
CAGTGGATCG AAGTCGGGCT GGAGAACCCA ACCAACATCA CCACGGTGGA GCTCAGCTTC
GACCTGACGG CGGACGTGGT GCCGACCACG GTGACCGTCA CCGCCGGATA CGAAAGCCGG
ACCGTGGAGA GCTTCGGCGA TCGCATGATC TTCGAACTGG AGGGAATCCA CGCCACCCAG
CGCATCCGCA TCTCCATCGA CGACACCTTC ACCCTCCGCC CGTTCGGTAG CGGGGTGGTG
GGGATCTCCG AAATCAGCAT CCCGGGCGTC CAGACCAGTC GCACCCTCCG GCTGCCGGAC
GCACCCGCCA CCGAGCAACC ACCGGCCGTC GTCGTCTCCG CCGACCCCCG GACGCCCGCC
TGTTTCATGG TCGACGGGAA GCCGCGCTGT TCCACCAACG CGATCCGCGG CTCGGAGGAC
GGACGCACGA TCGACCGTAC GCTCACCCTG CCAGCTGCCG GGACCTACGA CCCGCAGCTG
TGGGCCCAGC CGATGGACGG CTCCGCCCTG CACGCGGCCC TCGACCAGGC GGTGACCGAC
GCGCAGGCGT TGGGCCTCGC ACCCGAGGTG AGCGCCTCGT CAACCGGCGT CCCTCATCCG
AGTCGCCGCC CCGGAGCGGT ATTGGACGGG GACCCGGCCA CCAGCTGGTC ACCGGCGATC
AGCGACGACG CCCCGATCCT TCGCCTCACC TGGTTCAAGC CCCAGGTGAT CAGCGGCCTT
CGCTTCGCCG TTGACCCGGC CGTCGCGGCC ACCCGGCTCG GCAGCGTACG GGTGATCGCC
AACGACGGCA TCCGGGGCGG CCTGCTCCGC GACGACGGGG TACTAATGCT GGATCCACCG
GCGCGAACCA ACGAGATCAC CATCCAGTTC CTCGATCCGC CCTCCGCCAC CAGCATCGAT
CCGTACGGAC TTCGGTTGCC CGAGCCCCTA CCGATCGCGG TCGGTGAGAT CACCGTGCTT
CCAGGCGCCC CCACCAGCCC CGCAGACCTG GACACACCCT TGACGCTGGG CTGCGGCTCC
GGCCCGACGC TGACGATCGG CGAGGAGACG GTGACCACCG CCCTACGCGG CACAGTGCGG
GACCTCCTGG AGTTGCGGGA GGTGCCGGCC GAGCTGTGCG GCACCGACAC CGAGTTGCCG
CTCGGCGCCG CCGAGCACCG CCTCGTCGCC GCCGCCAGCC AGTTCGCCAC GCCGACCCGG
GTCGCTCTCG TACCGCAGCA GCGCACGGAC GTGATGACCC CGAGCGCCCT CGACGTCACG
GCGTGGGAGG CGACCGAGCG GCGGGTACAG GTCGCTGAGC ACGCCGTCGA ACGGGTACTG
GCGGTGCGGG AGAACACCAA CCGGGGCTGG CAGGCCACGC TCGCCGGCGA GCCGCTGCGC
CCCGTGGTCG TCGACGGCTG GCAGCAAGGC TGGCTCCTGC CCGCCGGCGC CGCCGGTGAG
GTTGTCCTGC GCTTCACCCC GGACGGCCCG TACCAGGTGG CGCTCCTGAC CGGAGGCGCC
CTGCTCCTCG GCGTCACACT CCTCGCGCTT CTCCCCGAAC GTCGGGGCAG CGCACCGGCG
CGGCCGGCAC GGCGAGCGCG ACGCCGGGCC ACTCGCTCCC TTCCCCTGCT GGCGGTCGGT
GCGATTGCCC TGATATTGCT CGGCGGCCTC GTCGGTGGCG TACTCGTCGC CGCTGGAGTC
CTACTCGCCC TCCCCGGTTC GCTGCGCATG CCCCGGTCGG CCGCCCCCCA CTGGGTACGG
CTCGTCCCCC GGTTCGTCGA GTCATGGCTC CCCGCCGCCC TCGTCCTGCT CGCCGGCTGG
ACGTACCTGG AGGCCACGCA GCGGCACACC GCCGCGCTTC CGCAACTCCT GATGGTCCTC
GCCCTCGGGT GCCTCTGGTT GTCGACATGC CTCCGACACC GGCCGGTTCA CCGCGCTCCC
CCGCACCCCG CGAAGCCGCC GTCCGCGGCG GATGTGCCCC GGCAGTCGGG GGGCGGCGTC
GCCGGGGCGA CCTCCTGGCG GGACTCCGAC CCATCGGGAT TCGTGTGA
|
|---|
| Protein sequence | MRAEVTSDAG ARPRRARRLD RGFRHLAICV VLTALAFQQA PGLIVPDTKV DLNVNPAGWL
LRSLHLWDPT GAFGQLQNQA YGYLWPMGPF FLVGSELGLQ PWVIQRLWWA LLFCVAYLGV
VRLAGSLGIG SPTGRMIAGV AFALSPRILT QLGWSSVESW PSAVAPWVLI PLIGLARGAP
LRRAVAGSAL AVACAGGVNA TAVFAVVPLA LLWLATLAPI GRRISAIAAW CGAVALATAW
WLVPLLILGR YSPPFLDYIE TAQSTTSVTD AVTTLRGASY WVAYLASPVE QAIPGGARLA
NELPLILATL AVAALGVLGL SRRGMPHRRF LVTGLMLGAA MVGLGHVSDL PNLLAGPQQQ
FLDGIGAPLR NTHKFDVLLR LPLTLGLAHL VSLVVKAART APAARHKKAV ARAWITTGVT
MAAVAAVASP AIIGGIATPG SAREVPPYWQ DAADWLDANT GPGRVLVVPG ARRPAYDWGS
TTDEIAQPLL ESSWAVRNSI PFTPPTTIRL LDAIEATLSS GAGSAGLADL LARSGVSHVL
FRADLDHGRS DTTRPAVVRQ ALQRSPGLTR VTTFGPIRGG PEAVDDIPDQ GLDVPGRALE
VYQVNRRVEP VVAYDRKDVA TVVGGPESLL DLAAAGLLSP APTVLAGDAD TDDLSGPVAM
TDGLRRREVS FGRSQDNASH THTADETLAP SAPAHDYLPD WAENWSTVAQ FEGINSIRTS
TARSQVSIPG GNRSEHQPYA AMDGDPTTSW QSAPYSRGDR QWIEVGLENP TNITTVELSF
DLTADVVPTT VTVTAGYESR TVESFGDRMI FELEGIHATQ RIRISIDDTF TLRPFGSGVV
GISEISIPGV QTSRTLRLPD APATEQPPAV VVSADPRTPA CFMVDGKPRC STNAIRGSED
GRTIDRTLTL PAAGTYDPQL WAQPMDGSAL HAALDQAVTD AQALGLAPEV SASSTGVPHP
SRRPGAVLDG DPATSWSPAI SDDAPILRLT WFKPQVISGL RFAVDPAVAA TRLGSVRVIA
NDGIRGGLLR DDGVLMLDPP ARTNEITIQF LDPPSATSID PYGLRLPEPL PIAVGEITVL
PGAPTSPADL DTPLTLGCGS GPTLTIGEET VTTALRGTVR DLLELREVPA ELCGTDTELP
LGAAEHRLVA AASQFATPTR VALVPQQRTD VMTPSALDVT AWEATERRVQ VAEHAVERVL
AVRENTNRGW QATLAGEPLR PVVVDGWQQG WLLPAGAAGE VVLRFTPDGP YQVALLTGGA
LLLGVTLLAL LPERRGSAPA RPARRARRRA TRSLPLLAVG AIALILLGGL VGGVLVAAGV
LLALPGSLRM PRSAAPHWVR LVPRFVESWL PAALVLLAGW TYLEATQRHT AALPQLLMVL
ALGCLWLSTC LRHRPVHRAP PHPAKPPSAA DVPRQSGGGV AGATSWRDSD PSGFV
|
|---|
| |