Gene Pnuc_1839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1839 
Symbol 
ID5053503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1918139 
End bp1918720 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content42% 
IMG OID640472012 
Productphage integrase family protein 
Protein accessionYP_001156616 
Protein GI145590019 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.637517 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAGC AAGCAAAAAC ACTTACACAG CAAGAACTAC GCAGAGTTTT AGATTACACA 
GCTACACGCA AGCACAGCGT ACGCAATCGT GCGCTACTAA TGACTACGCA CTTAAGTGGT 
ATGCGTGTAG GAGAAGTTGC TAGCTTGCGT AATAGCGATG TATTAGACGC AGAAGGCAAT 
ATACGCAACG AGATACGCTT AAGCGCAGAG CAAACAAAGG GCAATGAAGC GAGAGTTGTT 
TTTGTAAGCG ATAAGCTACG CAAGGAGTTG GAGCTATACA CACACTTAAT GCGTAATGCT 
TATGTCAATC CAGCACTTAA GTTCTTTTAT AGTCAAAAGC GCACTAGCGA TGGCTTTACA 
GCAAACACCC TCACACAATT CTTTCACTAT TTGTATAAAC GGGCTGGTAT TGATGGTGCT 
AGCTCACATA GTGGTAGACG CACATTCATT ACTAACTTAG CTACTAAAGG AGTTGGGGTG 
CGTGTACTGA TGAGCTTAGC TGGACATAAG AACATCAGTA CAACGCAGGC TTACATAGAT 
GTAAACGATG ATATGAAGCG TAAGGCTGTT GAGTTAATTT AA
 
Protein sequence
MSKQAKTLTQ QELRRVLDYT ATRKHSVRNR ALLMTTHLSG MRVGEVASLR NSDVLDAEGN 
IRNEIRLSAE QTKGNEARVV FVSDKLRKEL ELYTHLMRNA YVNPALKFFY SQKRTSDGFT 
ANTLTQFFHY LYKRAGIDGA SSHSGRRTFI TNLATKGVGV RVLMSLAGHK NISTTQAYID 
VNDDMKRKAV ELI